Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_056153 16 5631 XP_006723795 16 5631 XP_006723794 16 5631 XP_006723793 16 5631 XP_006723792 16 5631 XP_006723791 16 5631 XP_006723790 16 5631 NP_775929 16 7355 XP_005265147 16 7355 XP_006713180 16 7355 NP_001007076 15 9605 NP_057074 15 9605 NP_950240 15 9605 NP_835224 15 9605 NP_653291 15 9605 NP_954672 15 9605 NP_057669 15 9605 XP_006723107 15 9605 XP_005259626 15 9605 XP_005262712 15 9605 XP_005262711 15 9605 XP_005247001 15 9605 NP_005006 15 9605>NP_056153 Length = 1541 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 151 SYRASSQ 157>XP_006723795 Length = 1480 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 141 SYRASSQ 147>XP_006723794 Length = 1490 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 151 SYRASSQ 157>XP_006723793 Length = 1513 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 123 SYRASSQ 129>XP_006723792 Length = 1513 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 123 SYRASSQ 129>XP_006723791 Length = 1531 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 141 SYRASSQ 147>XP_006723790 Length = 1540 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AYRASSQ 7 +YRASSQ Sbjct: 150 SYRASSQ 156>NP_775929 Length = 331 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AYRASSQM 8 AYR SSQ+ Sbjct: 310 AYRYSSQL 317>XP_005265147 Length = 331 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AYRASSQM 8 AYR SSQ+ Sbjct: 310 AYRYSSQL 317>XP_006713180 Length = 331 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AYRASSQM 8 AYR SSQ+ Sbjct: 310 AYRYSSQL 317>NP_001007076 Length = 709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR SSQ++ Sbjct: 68 YRRSSQLD 75>NP_057074 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR SSQ++ Sbjct: 114 YRRSSQLD 121>NP_950240 Length = 694 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR SSQ++ Sbjct: 114 YRRSSQLD 121>NP_835224 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR +SQ+E Sbjct: 364 YRQASQLE 371>NP_653291 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AYRASSQME 9 A+R SSQ++ Sbjct: 375 AFRVSSQLK 383>NP_954672 Length = 355 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YRASSQME 9 YRASS+++ Sbjct: 202 YRASSRLK 209>NP_057669 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YRASSQME 9 YRASS+++ Sbjct: 226 YRASSRLK 233>XP_006723107 Length = 548 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AYRASSQME 9 A+R SSQ++ Sbjct: 406 AFRVSSQLK 414>XP_005259626 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YRASSQME 9 YRASS+++ Sbjct: 194 YRASSRLK 201>XP_005262712 Length = 789 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR SSQ++ Sbjct: 148 YRRSSQLD 155>XP_005262711 Length = 791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR SSQ++ Sbjct: 148 YRRSSQLD 155>XP_005247001 Length = 655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YRASSQME 9 YR +SQ+E Sbjct: 364 YRQASQLE 371>NP_005006 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 YRASSQM 8 Y+ASS+M Sbjct: 256 YKASSEM 262Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.103 0.245 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,125 Number of extensions: 303 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |