Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 299 NP_001075109 20 299 NP_000954 19 665 NP_005018 18 1935 NP_056053 17 3301 NP_000669 17 3301 NP_001155134 17 3301 NP_001155133 17 3301 XP_006714899 17 3301 XP_005265910 17 3301 XP_006714898 17 3301 XP_005265909 17 3301 XP_005265908 17 3301 XP_005265907 17 3301 NP_542158 17 4312 NP_001258297 17 4312 NP_000953 17 4312 NP_001258094 17 4312 NP_001258296 17 4312 NP_001258093 17 4312 NP_001258095 17 4312 NP_653252 17 4312 NP_002949 17 4312 XP_006717255 17 4312 XP_005252162 17 4312 XP_005251225 17 4312 XP_006716483 17 4312 XP_005251224 17 4312 NP_115266 17 4312 NP_061745 17 4312 NP_006132 16 5631 NP_001273086 16 5631 NP_001005861 16 5631 NP_001073867 16 7355 NP_001171890 16 7355 NP_001171891 16 7355 NP_055883 16 7355 NP_001035242 16 7355 NP_001165908 16 7355 NP_001165909 16 7355 NP_114088 16 7355 NP_061721 16 7355 XP_005251911 16 7355 XP_005251910 16 7355 XP_005251909 16 7355 XP_005251908 16 7355 XP_005251907 16 7355 NP_065944 15 9605 NP_005622 15 9605 NP_006835 15 9605 NP_001258767 15 9605 NP_001258763 15 9605 NP_001847 15 9605 NP_057709 15 9605 XP_005259774 15 9605 XP_005247575 15 9605 XP_005247574 15 9605 XP_005247573 15 9605 XP_005247572 15 9605 XP_005270538 15 9605 NP_006840 15 9605>NP_008835 Length = 4128 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYPALMVEK 9 AYPAL+VEK Sbjct: 3441 AYPALVVEK 3449>NP_001075109 Length = 4097 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYPALMVEK 9 AYPAL+VEK Sbjct: 3441 AYPALVVEK 3449>NP_000954 Length = 604 Score = 19.2 bits (38), Expect = 665 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 YPALMVEK 9 YPAL+VEK Sbjct: 490 YPALLVEK 497>NP_005018 Length = 728 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 YPALMVEK 9 +PAL+VEK Sbjct: 279 FPALLVEK 286>NP_056053 Length = 1113 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 882 YPALKVDK 889>NP_000669 Length = 572 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPA+M E+ Sbjct: 204 YPAIMTER 211>NP_001155134 Length = 1118 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 882 YPALKVDK 889>NP_001155133 Length = 1119 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 882 YPALKVDK 889>XP_006714899 Length = 881 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 644 YPALKVDK 651>XP_005265910 Length = 1112 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 882 YPALKVDK 889>XP_006714898 Length = 1117 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 887 YPALKVDK 894>XP_005265909 Length = 1118 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 887 YPALKVDK 894>XP_005265908 Length = 1123 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 887 YPALKVDK 894>XP_005265907 Length = 1124 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YPAL V+K Sbjct: 887 YPALKVDK 894>NP_542158 Length = 562 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 466 YPGLLLEK 473>NP_001258297 Length = 537 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 441 YPGLLLEK 448>NP_000953 Length = 599 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 503 YPGLLLEK 510>NP_001258094 Length = 490 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 394 YPGLLLEK 401>NP_001258296 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 357 YPGLLLEK 364>NP_001258093 Length = 551 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 455 YPGLLLEK 462>NP_001258095 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 357 YPGLLLEK 364>NP_653252 Length = 1463 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 YPALMVE 8 +PALMVE Sbjct: 1197 WPALMVE 1203>NP_002949 Length = 607 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 +YP L +EK Sbjct: 297 SYPTLRIEK 305>XP_006717255 Length = 537 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 441 YPGLLLEK 448>XP_005252162 Length = 574 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 478 YPGLLLEK 485>XP_005251225 Length = 848 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 YPALMVE 8 +PALMVE Sbjct: 582 WPALMVE 588>XP_006716483 Length = 1367 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 YPALMVE 8 +PALMVE Sbjct: 1101 WPALMVE 1107>XP_005251224 Length = 1439 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 YPALMVE 8 +PALMVE Sbjct: 1173 WPALMVE 1179>NP_115266 Length = 810 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 188 YPVLLLEK 195>NP_061745 Length = 927 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 188 YPVLLLEK 195>NP_006132 Length = 492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PALMVEK 9 PAL+VEK Sbjct: 299 PALVVEK 305>NP_001273086 Length = 415 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PALMVEK 9 PAL+VEK Sbjct: 222 PALVVEK 228>NP_001005861 Length = 610 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L +EK Sbjct: 301 YPTLRIEK 308>NP_001073867 Length = 2017 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 279 YPRLPVEK 286>NP_001171890 Length = 742 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 181 YPAFMME 187>NP_001171891 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 181 YPAFMME 187>NP_055883 Length = 708 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 147 YPAFMME 153>NP_001035242 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 147 YPAFMME 153>NP_001165908 Length = 784 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 223 YPAFMME 229>NP_001165909 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YPALMVE 8 YPA M+E Sbjct: 223 YPAFMME 229>NP_114088 Length = 818 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 182 YPELVLEK 189>NP_061721 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YPALMVEK 9 YP L++EK Sbjct: 182 YPELVLEK 189>XP_005251911 Length = 1839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 101 YPRLPVEK 108>XP_005251910 Length = 1839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 101 YPRLPVEK 108>XP_005251909 Length = 1839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 101 YPRLPVEK 108>XP_005251908 Length = 1839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 101 YPRLPVEK 108>XP_005251907 Length = 1845 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP L VEK Sbjct: 107 YPRLPVEK 114>NP_065944 Length = 1701 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 YPALMVEK 9 YPA+M+++ Sbjct: 613 YPAIMLKE 620>NP_005622 Length = 787 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PALMVEK 9 P+L+VEK Sbjct: 513 PSLLVEK 519>NP_006835 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP MV+K Sbjct: 214 YPYFMVQK 221>NP_001258767 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 301 AHPNLFIEK 309>NP_001258763 Length = 276 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 243 AHPNLFIEK 251>NP_001847 Length = 1604 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P +VEK Sbjct: 965 AHPGYLVEK 973>NP_057709 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 301 AHPNLFIEK 309>XP_005259774 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YPALMVEK 9 YP MV+K Sbjct: 214 YPYFMVQK 221>XP_005247575 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 303 AHPNLFIEK 311>XP_005247574 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 303 AHPNLFIEK 311>XP_005247573 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 303 AHPNLFIEK 311>XP_005247572 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P L +EK Sbjct: 303 AHPNLFIEK 311>XP_005270538 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYPALMVEK 9 A+P +VEK Sbjct: 949 AHPGYLVEK 957>NP_006840 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 YPALMVE 8 +PAL+VE Sbjct: 59 HPALLVE 65Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 434,683 Number of extensions: 318 Number of successful extensions: 61 Number of sequences better than 10000.0: 61 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 61 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |