Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 20 509 NP_001087241 20 509 XP_005265799 20 509 XP_005265798 20 509 XP_005265797 20 509 NP_149991 17 4312 NP_714913 16 5631 XP_005262943 16 5631 XP_005262942 16 5631 NP_009210 16 7355 NP_001012496 16 7355 NP_203748 16 7355 XP_006723057 16 7355 XP_005271772 16 7355 NP_055309 15 9605 XP_006721103 15 9605 XP_005255314 15 9605 XP_006721102 15 9605 XP_005255313 15 9605 XP_005255312 15 9605 XP_006721101 15 9605 XP_005255311 15 9605 XP_005255310 15 9605>NP_000213 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYGLIKSNA 9 AYGLIKS+A Sbjct: 608 AYGLIKSDA 616>NP_001087241 Length = 972 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYGLIKSNA 9 AYGLIKS+A Sbjct: 604 AYGLIKSDA 612>XP_005265799 Length = 973 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYGLIKSNA 9 AYGLIKS+A Sbjct: 605 AYGLIKSDA 613>XP_005265798 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYGLIKSNA 9 AYGLIKS+A Sbjct: 609 AYGLIKSDA 617>XP_005265797 Length = 977 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AYGLIKSNA 9 AYGLIKS+A Sbjct: 609 AYGLIKSDA 617>NP_149991 Length = 553 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YGLIKSNA 9 YGLIK+ A Sbjct: 240 YGLIKTGA 247>NP_714913 Length = 293 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AYGLIKSNA 9 AY L+KS A Sbjct: 215 AYSLLKSEA 223>XP_005262943 Length = 293 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AYGLIKSNA 9 AY L+KS A Sbjct: 215 AYSLLKSEA 223>XP_005262942 Length = 305 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AYGLIKSNA 9 AY L+KS A Sbjct: 227 AYSLLKSEA 235>NP_009210 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 YGLIKS 7 YGL+KS Sbjct: 409 YGLVKS 414>NP_001012496 Length = 471 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 YGLIKS 7 YGL+KS Sbjct: 405 YGLVKS 410>NP_203748 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GLIKSNA 9 GL+KSN+ Sbjct: 463 GLVKSNS 469>XP_006723057 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 YGLIKS 7 YGL+KS Sbjct: 245 YGLVKS 250>XP_005271772 Length = 884 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GLIKSNA 9 GL+KSN+ Sbjct: 464 GLVKSNS 470>NP_055309 Length = 1962 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 810 ATGMVKSN 817>XP_006721103 Length = 1597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 778 ATGMVKSN 785>XP_005255314 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 557 ATGMVKSN 564>XP_006721102 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 668 ATGMVKSN 675>XP_005255313 Length = 1822 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 778 ATGMVKSN 785>XP_005255312 Length = 1871 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 778 ATGMVKSN 785>XP_006721101 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 778 ATGMVKSN 785>XP_005255311 Length = 1913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 810 ATGMVKSN 817>XP_005255310 Length = 1919 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYGLIKSN 8 A G++KSN Sbjct: 778 ATGMVKSN 785Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.128 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 480,706 Number of extensions: 674 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |