Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005270509 17 4312 XP_005270508 17 4312 NP_055140 16 5631 NP_001098707 16 5631 NP_001263400 16 5631 NP_056170 16 5631 NP_620636 16 5631 NP_005724 16 5631 NP_003062 16 5631 XP_006721857 16 5631 XP_005258011 16 5631 XP_006714577 16 5631 XP_005247781 16 5631 NP_002462 16 7355 NP_112176 16 7355 NP_001252511 16 7355 NP_001129419 16 7355 XP_006720215 16 7355 XP_006720214 16 7355 XP_005267751 16 7355 NP_001073932 15 9605 NP_001368 15 9605 XP_006718966 15 9605 XP_006711533 15 9605 XP_005245422 15 9605 NP_065821 15 9605>XP_005270509 Length = 349 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VVKKNLL 8 +VKKNLL Sbjct: 341 IVKKNLL 347>XP_005270508 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VVKKNLL 8 +VKKNLL Sbjct: 422 IVKKNLL 428>NP_055140 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VVKKNLL 8 VVKKN+L Sbjct: 404 VVKKNIL 410>NP_001098707 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VVKKNLL 8 VVKKN+L Sbjct: 457 VVKKNIL 463>NP_001263400 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VVKKNLL 8 VVKKN+L Sbjct: 404 VVKKNIL 410>NP_056170 Length = 739 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 ++KKNL R Sbjct: 647 IIKKNLCR 654>NP_620636 Length = 1009 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 VKKNLL+ Sbjct: 323 VKKNLLK 329>NP_005724 Length = 890 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AVVKKNLL 8 +VV+KNLL Sbjct: 33 SVVRKNLL 40>NP_003062 Length = 1009 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 VKKNLL+ Sbjct: 323 VKKNLLK 329>XP_006721857 Length = 603 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 ++KKNL R Sbjct: 511 IIKKNLCR 518>XP_005258011 Length = 716 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 ++KKNL R Sbjct: 624 IIKKNLCR 631>XP_006714577 Length = 890 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AVVKKNLL 8 +VV+KNLL Sbjct: 33 SVVRKNLL 40>XP_005247781 Length = 1008 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 VKKNLL+ Sbjct: 323 VKKNLLK 329>NP_002462 Length = 1939 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KKNLLR 9 KKNLLR Sbjct: 1860 KKNLLR 1865>NP_112176 Length = 101 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNLL+ Sbjct: 45 IKKNLLK 51>NP_001252511 Length = 63 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNLL+ Sbjct: 45 IKKNLLK 51>NP_001129419 Length = 146 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNLL+ Sbjct: 45 IKKNLLK 51>XP_006720215 Length = 1968 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KKNLLR 9 KKNLLR Sbjct: 1889 KKNLLR 1894>XP_006720214 Length = 1978 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KKNLLR 9 KKNLLR Sbjct: 1899 KKNLLR 1904>XP_005267751 Length = 1979 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KKNLLR 9 KKNLLR Sbjct: 1900 KKNLLR 1905>NP_001073932 Length = 4314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNL+R Sbjct: 3843 LKKNLMR 3849>NP_001368 Length = 4307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNL+R Sbjct: 3836 LKKNLMR 3842>XP_006718966 Length = 4300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKKNLLR 9 +KKNL+R Sbjct: 3829 LKKNLMR 3835>XP_006711533 Length = 747 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 V+KK LLR Sbjct: 629 VLKKELLR 636>XP_005245422 Length = 1203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 V+KK LLR Sbjct: 629 VLKKELLR 636>NP_065821 Length = 1203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVKKNLLR 9 V+KK LLR Sbjct: 629 VLKKELLR 636Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.137 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 419,214 Number of extensions: 513 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |