Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1482 XP_005262424 18 1482 NP_001230178 16 7355 NP_065759 16 7355 NP_001128243 16 7355 NP_001230176 16 7355 NP_001034565 16 7355 NP_001070818 16 7355 NP_001230177 16 7355>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSTTSAIK 9 VSTTSAIK Sbjct: 385 VSTTSAIK 392>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSTTSAIK 9 VSTTSAIK Sbjct: 180 VSTTSAIK 187>NP_001230178 Length = 544 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSTTSAIK 9 + TTSA+K Sbjct: 261 IKTTSAVK 268>NP_065759 Length = 1116 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVSTTSAI 8 A++TTSA+ Sbjct: 438 AIATTSAV 445>NP_001128243 Length = 1139 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVSTTSAI 8 A++TTSA+ Sbjct: 461 AIATTSAV 468>NP_001230176 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSTTSAIK 9 + TTSA+K Sbjct: 208 IKTTSAVK 215>NP_001034565 Length = 390 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSTTSAIK 9 + TTSA+K Sbjct: 107 IKTTSAVK 114>NP_001070818 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSTTSAIK 9 + TTSA+K Sbjct: 286 IKTTSAVK 293>NP_001230177 Length = 544 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSTTSAIK 9 + TTSA+K Sbjct: 261 IKTTSAVK 268Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.0985 0.210 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 213,779 Number of extensions: 182 Number of successful extensions: 9 Number of sequences better than 10000.0: 9 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 9 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |