Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 20 390 NP_009297 20 390 NP_689777 18 1482 NP_060360 18 1482 XP_005250858 18 1482 XP_005250857 18 1482 NP_997046 17 4312 NP_951038 16 5631 NP_001159817 16 5631 NP_001127812 16 5631 NP_115678 16 5631 XP_006715855 16 5631 NP_001070671 16 7355 NP_001269732 16 7355 NP_001269731 16 7355 NP_001269730 16 7355 NP_065831 16 7355 NP_065705 16 7355 NP_065825 16 7355 XP_005247719 16 7355 NP_065391 15 9605 NP_976328 15 9605 NP_055999 15 9605 NP_001137854 15 9605 NP_061874 15 9605 NP_001269786 15 9605 NP_065868 15 9605 XP_005261680 15 9605 XP_005247738 15 9605 XP_005247737 15 9605 XP_006713778 15 9605 XP_005247601 15 9605 XP_006713735 15 9605 XP_006713734 15 9605 XP_006713136 15 9605>NP_005148 Length = 1130 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 AVNSD AKP Sbjct: 940 AVNSDAAKP 948>NP_009297 Length = 1149 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 AVNSD AKP Sbjct: 959 AVNSDAAKP 967>NP_689777 Length = 3997 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 VNSDVAKP 9 V+SDVAKP Sbjct: 1855 VDSDVAKP 1862>NP_060360 Length = 4022 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 VNSDVAKP 9 V+SDVAKP Sbjct: 1880 VDSDVAKP 1887>XP_005250858 Length = 4022 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 VNSDVAKP 9 V+SDVAKP Sbjct: 1880 VDSDVAKP 1887>XP_005250857 Length = 4022 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 VNSDVAKP 9 V+SDVAKP Sbjct: 1880 VDSDVAKP 1887>NP_997046 Length = 547 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 +VNSD +KP Sbjct: 155 SVNSDNSKP 163>NP_951038 Length = 355 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVNSDVAK 8 +VNSD++K Sbjct: 249 SVNSDISK 256>NP_001159817 Length = 246 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVNSDVAK 8 +VNSD++K Sbjct: 140 SVNSDISK 147>NP_001127812 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 +V SDV+KP Sbjct: 52 SVASDVSKP 60>NP_115678 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 +V SDV+KP Sbjct: 52 SVASDVSKP 60>XP_006715855 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AVNSDVAKP 9 +V SDV+KP Sbjct: 52 SVASDVSKP 60>NP_001070671 Length = 985 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 640 NTDAAKP 646>NP_001269732 Length = 886 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 541 NTDAAKP 547>NP_001269731 Length = 1017 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 672 NTDAAKP 678>NP_001269730 Length = 984 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 639 NTDAAKP 645>NP_065831 Length = 1392 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 A NS++ KP Sbjct: 1060 AANSELVKP 1068>NP_065705 Length = 1050 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 705 NTDAAKP 711>NP_065825 Length = 1006 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AVNSDVAK 8 A N DVAK Sbjct: 439 AANGDVAK 446>XP_005247719 Length = 919 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+D AKP Sbjct: 574 NTDAAKP 580>NP_065391 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 NSD A+P Sbjct: 159 NSDTAEP 165>NP_976328 Length = 911 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+DV KP Sbjct: 685 NTDVEKP 691>NP_055999 Length = 1001 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+DV KP Sbjct: 978 NADVQKP 984>NP_001137854 Length = 1127 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+DV KP Sbjct: 1104 NADVQKP 1110>NP_061874 Length = 1706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 AVN V+KP Sbjct: 1696 AVNFGVSKP 1704>NP_001269786 Length = 1694 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 AVN V+KP Sbjct: 1684 AVNFGVSKP 1692>NP_065868 Length = 936 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VNSDVAKP 9 VNS VA P Sbjct: 622 VNSPVASP 629>XP_005261680 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 NSD A+P Sbjct: 210 NSDTAEP 216>XP_005247738 Length = 615 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VNSDVAKP 9 VNS VA P Sbjct: 301 VNSPVASP 308>XP_005247737 Length = 661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VNSDVAKP 9 VNS VA P Sbjct: 600 VNSPVASP 607>XP_006713778 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VNSDVAKP 9 VNS VA P Sbjct: 609 VNSPVASP 616>XP_005247601 Length = 1484 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 AVN V+KP Sbjct: 1474 AVNFGVSKP 1482>XP_006713735 Length = 1656 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 AVN V+KP Sbjct: 1646 AVNFGVSKP 1654>XP_006713734 Length = 1693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVNSDVAKP 9 AVN V+KP Sbjct: 1683 AVNFGVSKP 1691>XP_006713136 Length = 1022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSDVAKP 9 N+DV KP Sbjct: 999 NADVQKP 1005Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.115 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 512,595 Number of extensions: 846 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |