Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 19 869 NP_055903 19 869 NP_060175 16 7355 NP_001098024 16 7355 NP_997198 16 7355 XP_005254553 16 7355 XP_005254552 16 7355 XP_005254551 16 7355 XP_006720646 16 7355 NP_001106849 15 9605 NP_060663 15 9605 NP_079032 15 9605 XP_005270210 15 9605 XP_006718033 15 9605>NP_001155973 Length = 1833 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVLQTILSR 9 AVLQT+LSR Sbjct: 602 AVLQTLLSR 610>NP_055903 Length = 1723 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVLQTILSR 9 AVLQT+LSR Sbjct: 602 AVLQTLLSR 610>NP_060175 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 156 AVLNTILS 163>NP_001098024 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 156 AVLNTILS 163>NP_997198 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLQTILS 8 VLQT+LS Sbjct: 434 VLQTVLS 440>XP_005254553 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 41 AVLNTILS 48>XP_005254552 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 142 AVLNTILS 149>XP_005254551 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 156 AVLNTILS 163>XP_006720646 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVLQTILS 8 AVL TILS Sbjct: 156 AVLNTILS 163>NP_001106849 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 AVLQTILSR 9 +V+QT+LS+ Sbjct: 622 SVMQTLLSQ 630>NP_060663 Length = 1268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 AVLQTILSR 9 +V+QT+LS+ Sbjct: 622 SVMQTLLSQ 630>NP_079032 Length = 949 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LQTILSR 9 LQT+LSR Sbjct: 773 LQTMLSR 779>XP_005270210 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LQTILSR 9 LQT+LSR Sbjct: 712 LQTMLSR 718>XP_006718033 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LQTILSR 9 LQT+LSR Sbjct: 712 LQTMLSR 718Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.134 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 285,199 Number of extensions: 447 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |