Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 18 1935 XP_005248577 18 1935 XP_005248576 18 1935 NP_000248 17 3301 XP_005267754 17 3301 XP_005267753 17 3301 NP_001186020 17 4312 NP_001186014 17 4312 NP_775804 17 4312 NP_001186018 17 4312 NP_001186021 17 4312 XP_005244992 17 4312 XP_006711258 17 4312 XP_005244991 17 4312 NP_079023 16 5631 NP_001073283 16 7355 NP_694567 16 7355 XP_005253356 16 7355 XP_006719092 16 7355 NP_006199 15 9605 NP_001239155 15 9605 NP_006613 15 9605 NP_004064 15 9605 XP_005267074 15 9605>NP_005912 Length = 1512 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVFGAAARL 9 A FGAAARL Sbjct: 1387 ADFGAAARL 1395>XP_005248577 Length = 1349 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVFGAAARL 9 A FGAAARL Sbjct: 1224 ADFGAAARL 1232>XP_005248576 Length = 1375 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVFGAAARL 9 A FGAAARL Sbjct: 1250 ADFGAAARL 1258>NP_000248 Length = 1935 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 AVFGAAA 7 AVFGAAA Sbjct: 7 AVFGAAA 13>XP_005267754 Length = 1087 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 AVFGAAA 7 AVFGAAA Sbjct: 7 AVFGAAA 13>XP_005267753 Length = 1935 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 AVFGAAA 7 AVFGAAA Sbjct: 7 AVFGAAA 13>NP_001186020 Length = 981 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 955 AALGAAARL 963>NP_001186014 Length = 1035 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 1009 AALGAAARL 1017>NP_775804 Length = 981 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 955 AALGAAARL 963>NP_001186018 Length = 1035 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 1009 AALGAAARL 1017>NP_001186021 Length = 536 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 510 AALGAAARL 518>XP_005244992 Length = 1035 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 1009 AALGAAARL 1017>XP_006711258 Length = 1035 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 1009 AALGAAARL 1017>XP_005244991 Length = 1035 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 A GAAARL Sbjct: 1009 AALGAAARL 1017>NP_079023 Length = 775 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AVFGAAARL 9 + FG AARL Sbjct: 14 SAFGGAARL 22>NP_001073283 Length = 183 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AVFGAAAR 8 +VFG AAR Sbjct: 106 SVFGPAAR 113>NP_694567 Length = 163 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AVFGAAAR 8 +VFG AAR Sbjct: 86 SVFGPAAR 93>XP_005253356 Length = 170 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AVFGAAAR 8 +VFG AAR Sbjct: 93 SVFGPAAR 100>XP_006719092 Length = 183 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AVFGAAAR 8 +VFG AAR Sbjct: 106 SVFGPAAR 113>NP_006199 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VFGAAARL 9 ++G AARL Sbjct: 450 IYGPAARL 457>NP_001239155 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 FGAAARL 9 FG AARL Sbjct: 210 FGLAARL 216>NP_006613 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 FGAAARL 9 FG AARL Sbjct: 224 FGLAARL 230>NP_004064 Length = 646 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 FGAAARL 9 FG AARL Sbjct: 204 FGLAARL 210>XP_005267074 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VFGAAARL 9 ++G AARL Sbjct: 80 IYGPAARL 87Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.138 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 312,034 Number of extensions: 195 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |