Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_001268421                                                           19     665
NP_000170                                                              19     665
NP_001268422                                                           19     665
NP_001268423                                                           19     665
XP_005264328                                                           19     665
NP_899068                                                              16    5631
NP_055240                                                              16    5631
NP_006026                                                              16    5631
XP_005268287                                                           16    5631
XP_005268286                                                           16    5631
XP_005268285                                                           16    5631
XP_005268284                                                           16    5631
XP_005251981                                                           16    5631
XP_005251980                                                           16    5631
NP_056070                                                              16    7355
NP_113655                                                              16    7355
NP_001245356                                                           16    7355
NP_001245355                                                           16    7355
NP_001245357                                                           16    7355
XP_005249022                                                           16    7355
XP_006714863                                                           16    7355
XP_006714862                                                           16    7355
XP_005268578                                                           16    7355
NP_955523                                                              15    9605
NP_055766                                                              15    9605
NP_955522                                                              15    9605
NP_004968                                                              15    9605
NP_002428                                                              15    9605
NP_001094832                                                           15    9605
NP_001177738                                                           15    9605
XP_006723266                                                           15    9605
XP_005264384                                                           15    9605
XP_006712084                                                           15    9605
XP_005264383                                                           15    9605
NP_068750                                                              15    9605
>NP_001268421
          Length = 1230

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AVECIAVL 8
           AVECIAVL
Sbjct: 920 AVECIAVL 927
>NP_000170
          Length = 1360

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            AVECIAVL
Sbjct: 1050 AVECIAVL 1057
>NP_001268422
          Length = 1058

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AVECIAVL 8
           AVECIAVL
Sbjct: 748 AVECIAVL 755
>NP_001268423
          Length = 1058

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AVECIAVL 8
           AVECIAVL
Sbjct: 748 AVECIAVL 755
>XP_005264328
          Length = 1261

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AVECIAVL 8
           AVECIAVL
Sbjct: 951 AVECIAVL 958
>NP_899068
          Length = 895

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   VECIAVLM 9
           + C+AVLM
Sbjct: 469 INCMAVLM 476
>NP_055240
          Length = 1065

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   VECIAVLM 9
           + C+AVLM
Sbjct: 469 INCMAVLM 476
>NP_006026
          Length = 1711

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            +V+C+AVL
Sbjct: 1375 SVQCLAVL 1382
>XP_005268287
          Length = 1490

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            +V+C+AVL
Sbjct: 1392 SVQCLAVL 1399
>XP_005268286
          Length = 1685

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            +V+C+AVL
Sbjct: 1349 SVQCLAVL 1356
>XP_005268285
          Length = 1702

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            +V+C+AVL
Sbjct: 1366 SVQCLAVL 1373
>XP_005268284
          Length = 1728

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1    AVECIAVL 8
            +V+C+AVL
Sbjct: 1392 SVQCLAVL 1399
>XP_005251981
          Length = 988

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   VECIAVLM 9
           + C+AVLM
Sbjct: 373 INCMAVLM 380
>XP_005251980
          Length = 1084

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   VECIAVLM 9
           + C+AVLM
Sbjct: 469 INCMAVLM 476
>NP_056070
          Length = 1755

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   ECIAVLM 9
           +C+AVLM
Sbjct: 568 KCLAVLM 574
>NP_113655
          Length = 959

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 736 CVAVLM 741
>NP_001245356
          Length = 896

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 673 CVAVLM 678
>NP_001245355
          Length = 945

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 722 CVAVLM 727
>NP_001245357
          Length = 983

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 760 CVAVLM 765
>XP_005249022
          Length = 1755

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   ECIAVLM 9
           +C+AVLM
Sbjct: 568 KCLAVLM 574
>XP_006714863
          Length = 921

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 698 CVAVLM 703
>XP_006714862
          Length = 956

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 733 CVAVLM 738
>XP_005268578
          Length = 959

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   CIAVLM 9
           C+AVLM
Sbjct: 736 CVAVLM 741
>NP_955523
          Length = 462

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   AVECIAVL 8
           AVE IAVL
Sbjct: 225 AVEMIAVL 232
>NP_055766
          Length = 407

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   AVECIAVL 8
           AVE IAVL
Sbjct: 225 AVEMIAVL 232
>NP_955522
          Length = 333

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   AVECIAVL 8
           AVE IAVL
Sbjct: 225 AVEMIAVL 232
>NP_004968
          Length = 757

 Score = 15.4 bits (28), Expect =  9605
 Identities = 3/7 (42%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           ++C+A+L
Sbjct: 384 IDCVAIL 390
>NP_002428
          Length = 176

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           V+C+AV+
Sbjct: 158 VQCVAVI 164
>NP_001094832
          Length = 458

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1  AVECIAVL 8
          AVEC A L
Sbjct: 81 AVECAAFL 88
>NP_001177738
          Length = 672

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 1   AVECIAVL 8
           A+EC+ V+
Sbjct: 342 AIECLVVV 349
>XP_006723266
          Length = 757

 Score = 15.4 bits (28), Expect =  9605
 Identities = 3/7 (42%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           ++C+A+L
Sbjct: 384 IDCVAIL 390
>XP_005264384
          Length = 123

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           V+C+AV+
Sbjct: 105 VQCVAVI 111
>XP_006712084
          Length = 160

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           V+C+AV+
Sbjct: 142 VQCVAVI 148
>XP_005264383
          Length = 176

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 2   VECIAVL 8
           V+C+AV+
Sbjct: 158 VQCVAVI 164
>NP_068750
          Length = 703

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 1   AVECIAVL 8
           A+EC+ V+
Sbjct: 373 AIECLVVV 380
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.341    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 547,220
Number of extensions: 444
Number of successful extensions: 35
Number of sequences better than 10000.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.6 bits)
S2: 28 (15.4 bits)

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