Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 665 NP_000170 19 665 NP_001268422 19 665 NP_001268423 19 665 XP_005264328 19 665 NP_899068 16 5631 NP_055240 16 5631 NP_006026 16 5631 XP_005268287 16 5631 XP_005268286 16 5631 XP_005268285 16 5631 XP_005268284 16 5631 XP_005251981 16 5631 XP_005251980 16 5631 NP_056070 16 7355 NP_113655 16 7355 NP_001245356 16 7355 NP_001245355 16 7355 NP_001245357 16 7355 XP_005249022 16 7355 XP_006714863 16 7355 XP_006714862 16 7355 XP_005268578 16 7355 NP_955523 15 9605 NP_055766 15 9605 NP_955522 15 9605 NP_004968 15 9605 NP_002428 15 9605 NP_001094832 15 9605 NP_001177738 15 9605 XP_006723266 15 9605 XP_005264384 15 9605 XP_006712084 15 9605 XP_005264383 15 9605 NP_068750 15 9605>NP_001268421 Length = 1230 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 AVECIAVL Sbjct: 920 AVECIAVL 927>NP_000170 Length = 1360 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 AVECIAVL Sbjct: 1050 AVECIAVL 1057>NP_001268422 Length = 1058 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 AVECIAVL Sbjct: 748 AVECIAVL 755>NP_001268423 Length = 1058 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 AVECIAVL Sbjct: 748 AVECIAVL 755>XP_005264328 Length = 1261 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 AVECIAVL Sbjct: 951 AVECIAVL 958>NP_899068 Length = 895 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VECIAVLM 9 + C+AVLM Sbjct: 469 INCMAVLM 476>NP_055240 Length = 1065 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VECIAVLM 9 + C+AVLM Sbjct: 469 INCMAVLM 476>NP_006026 Length = 1711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 +V+C+AVL Sbjct: 1375 SVQCLAVL 1382>XP_005268287 Length = 1490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 +V+C+AVL Sbjct: 1392 SVQCLAVL 1399>XP_005268286 Length = 1685 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 +V+C+AVL Sbjct: 1349 SVQCLAVL 1356>XP_005268285 Length = 1702 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 +V+C+AVL Sbjct: 1366 SVQCLAVL 1373>XP_005268284 Length = 1728 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AVECIAVL 8 +V+C+AVL Sbjct: 1392 SVQCLAVL 1399>XP_005251981 Length = 988 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VECIAVLM 9 + C+AVLM Sbjct: 373 INCMAVLM 380>XP_005251980 Length = 1084 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VECIAVLM 9 + C+AVLM Sbjct: 469 INCMAVLM 476>NP_056070 Length = 1755 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ECIAVLM 9 +C+AVLM Sbjct: 568 KCLAVLM 574>NP_113655 Length = 959 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 736 CVAVLM 741>NP_001245356 Length = 896 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 673 CVAVLM 678>NP_001245355 Length = 945 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 722 CVAVLM 727>NP_001245357 Length = 983 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 760 CVAVLM 765>XP_005249022 Length = 1755 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ECIAVLM 9 +C+AVLM Sbjct: 568 KCLAVLM 574>XP_006714863 Length = 921 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 698 CVAVLM 703>XP_006714862 Length = 956 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 733 CVAVLM 738>XP_005268578 Length = 959 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CIAVLM 9 C+AVLM Sbjct: 736 CVAVLM 741>NP_955523 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVECIAVL 8 AVE IAVL Sbjct: 225 AVEMIAVL 232>NP_055766 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVECIAVL 8 AVE IAVL Sbjct: 225 AVEMIAVL 232>NP_955522 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AVECIAVL 8 AVE IAVL Sbjct: 225 AVEMIAVL 232>NP_004968 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 3/7 (42%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 ++C+A+L Sbjct: 384 IDCVAIL 390>NP_002428 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 V+C+AV+ Sbjct: 158 VQCVAVI 164>NP_001094832 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AVECIAVL 8 AVEC A L Sbjct: 81 AVECAAFL 88>NP_001177738 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AVECIAVL 8 A+EC+ V+ Sbjct: 342 AIECLVVV 349>XP_006723266 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 3/7 (42%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 ++C+A+L Sbjct: 384 IDCVAIL 390>XP_005264384 Length = 123 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 V+C+AV+ Sbjct: 105 VQCVAVI 111>XP_006712084 Length = 160 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 V+C+AV+ Sbjct: 142 VQCVAVI 148>XP_005264383 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VECIAVL 8 V+C+AV+ Sbjct: 158 VQCVAVI 164>NP_068750 Length = 703 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AVECIAVL 8 A+EC+ V+ Sbjct: 373 AIECLVVV 380Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 547,220 Number of extensions: 444 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |