Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 18 1482 XP_005248577 18 1482 XP_005248576 18 1482 NP_004932 15 9605 XP_005257171 15 9605 XP_005257170 15 9605>NP_005912 Length = 1512 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVAIAMAMS 9 A+AIAMAMS Sbjct: 1188 ALAIAMAMS 1196>XP_005248577 Length = 1349 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVAIAMAMS 9 A+AIAMAMS Sbjct: 1025 ALAIAMAMS 1033>XP_005248576 Length = 1375 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVAIAMAMS 9 A+AIAMAMS Sbjct: 1051 ALAIAMAMS 1059>NP_004932 Length = 1220 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AVAIAMA 7 AVA+AMA Sbjct: 2 AVAVAMA 8>XP_005257171 Length = 1181 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AVAIAMA 7 AVA+AMA Sbjct: 2 AVAVAMA 8>XP_005257170 Length = 1218 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AVAIAMA 7 AVA+AMA Sbjct: 2 AVAVAMA 8Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.115 0.250 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 119,655 Number of extensions: 115 Number of successful extensions: 6 Number of sequences better than 10000.0: 6 Number of HSP's gapped: 6 Number of HSP's successfully gapped: 6 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |