Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1482 XP_005262424 18 1482 NP_006176 17 4312 NP_001273490 17 4312 XP_006718633 17 4312 XP_006718632 17 4312 XP_006718631 17 4312 XP_006718630 17 4312 XP_006718629 17 4312 XP_006718628 17 4312 XP_006718627 17 4312 XP_006718626 17 4312 XP_006718625 17 4312 NP_061720 17 4312 NP_075067 16 5631 NP_064580 16 7355 NP_001276968 16 7355 NP_001276969 16 7355 NP_001276994 16 7355 NP_001122401 16 7355 NP_002933 16 7355 XP_006713342 16 7355 NP_001195 15 9605>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATTQILNAT 9 ATTQ LNAT Sbjct: 830 ATTQRLNAT 838>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATTQILNAT 9 ATTQ LNAT Sbjct: 625 ATTQRLNAT 633>NP_006176 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>NP_001273490 Length = 2101 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1797 TTQIINIT 1804>XP_006718633 Length = 2101 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1797 TTQIINIT 1804>XP_006718632 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718631 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718630 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718629 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718628 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718627 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718626 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>XP_006718625 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 1811 TTQIINIT 1818>NP_061720 Length = 4024 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTQILNAT 9 TTQI+N T Sbjct: 2149 TTQIVNGT 2156>NP_075067 Length = 596 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ATTQILNAT 9 ATT+++N T Sbjct: 577 ATTKLMNGT 585>NP_064580 Length = 293 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ATTQILNA 8 A TQ+LNA Sbjct: 15 ALTQLLNA 22>NP_001276968 Length = 1382 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 1002 ATTQILHS 1009>NP_001276969 Length = 1443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 1002 ATTQILHS 1009>NP_001276994 Length = 785 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 405 ATTQILHS 412>NP_001122401 Length = 1394 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 1014 ATTQILHS 1021>NP_002933 Length = 1378 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 998 ATTQILHS 1005>XP_006713342 Length = 1205 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATTQILNA 8 ATTQIL++ Sbjct: 1018 ATTQILHS 1025>NP_001195 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ATTQILNAT 9 ATTQ N T Sbjct: 821 ATTQYANGT 829Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.109 0.261 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 302,895 Number of extensions: 345 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |