Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001165907 17 4312 NP_002628 17 4312 NP_001116142 17 4312 XP_006724724 17 4312 NP_775871 16 5631 NP_001360 16 7355 NP_071898 16 7355 XP_005248319 16 7355 NP_476506 15 9605 NP_001137292 15 9605 NP_476505 15 9605 NP_004360 15 9605 NP_005229 15 9605 NP_476508 15 9605 NP_476507 15 9605 NP_689493 15 9605 NP_640337 15 9605 NP_001121187 15 9605 XP_005271485 15 9605 XP_006715402 15 9605 XP_005246123 15 9605 XP_005246122 15 9605 XP_006712316 15 9605 XP_005245071 15 9605>NP_001165907 Length = 1151 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TKQE++T Sbjct: 279 TKQEIIT 285>NP_002628 Length = 1223 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TKQE++T Sbjct: 279 TKQEIIT 285>NP_001116142 Length = 1210 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TKQE++T Sbjct: 279 TKQEIIT 285>XP_006724724 Length = 1164 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TKQE++T Sbjct: 279 TKQEIIT 285>NP_775871 Length = 8384 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTKQEVVT 9 TTK E++T Sbjct: 6916 TTKAEIIT 6923>NP_001360 Length = 4624 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TTKQEVVT 9 +TK+EV+T Sbjct: 1129 STKKEVIT 1136>NP_071898 Length = 459 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ATTKQEVV 8 ATTKQ+ V Sbjct: 187 ATTKQKAV 194>XP_005248319 Length = 4609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TTKQEVVT 9 +TK+EV+T Sbjct: 1114 STKKEVIT 1121>NP_476506 Length = 1237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 298 TKREVIT 304>NP_001137292 Length = 485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQEVVT 9 KQEVVT Sbjct: 271 KQEVVT 276>NP_476505 Length = 1036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 97 TKREVIT 103>NP_004360 Length = 3177 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 504 TKREVIT 510>NP_005229 Length = 441 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQEVVT 9 KQEVVT Sbjct: 227 KQEVVT 232>NP_476508 Length = 2971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 298 TKREVIT 304>NP_476507 Length = 2570 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 97 TKREVIT 103>NP_689493 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TTKQEVV 8 TTK EVV Sbjct: 387 TTKNEVV 393>NP_640337 Length = 1115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 +KQEV+T Sbjct: 531 SKQEVIT 537>NP_001121187 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 +KQEV+T Sbjct: 531 SKQEVIT 537>XP_005271485 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQEVVT 9 KQEVVT Sbjct: 204 KQEVVT 209>XP_006715402 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 +KQEV+T Sbjct: 531 SKQEVIT 537>XP_005246123 Length = 2770 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 97 TKREVIT 103>XP_005246122 Length = 2977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 504 TKREVIT 510>XP_006712316 Length = 3010 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TKQEVVT 9 TK+EV+T Sbjct: 504 TKREVIT 510>XP_005245071 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TTKQEVV 8 TTK EVV Sbjct: 386 TTKNEVV 392Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.103 0.231 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 409,253 Number of extensions: 338 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |