Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 18 1482 NP_001091680 18 1482 NP_001091679 18 1482 XP_006713048 18 1482 XP_005264943 18 1482 NP_056082 17 4312 NP_001166028 17 4312 NP_001193830 17 4312 NP_005886 17 4312 NP_001073333 17 4312 XP_005266224 17 4312 XP_006719803 17 4312 XP_005266222 17 4312 XP_005266221 17 4312 XP_006719802 17 4312 XP_006719801 17 4312 XP_006719800 17 4312 XP_006719799 17 4312 XP_005266219 17 4312 XP_006719362 17 4312 XP_005249957 17 4312 NP_006015 17 4312 NP_001192136 16 5631 NP_919231 16 5631 NP_001192135 16 5631 NP_001361 16 5631 XP_005261221 16 5631 XP_006712019 16 5631 NP_071353 16 7355 XP_005257627 16 7355 NP_002793 16 7355 NP_115499 15 9605 NP_954648 15 9605 NP_954649 15 9605 NP_001274103 15 9605 NP_000343 15 9605 NP_001271271 15 9605 XP_006718349 15 9605>NP_001895 Length = 781 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA LMEL Sbjct: 2 ATQADLMEL 10>NP_001091680 Length = 781 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA LMEL Sbjct: 2 ATQADLMEL 10>NP_001091679 Length = 781 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA LMEL Sbjct: 2 ATQADLMEL 10>XP_006713048 Length = 720 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA LMEL Sbjct: 2 ATQADLMEL 10>XP_005264943 Length = 781 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA LMEL Sbjct: 2 ATQADLMEL 10>NP_056082 Length = 1486 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA L+EL Sbjct: 216 ATQAELLEL 224>NP_001166028 Length = 1134 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>NP_001193830 Length = 747 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TQAGLMEL 9 T+AGL+EL Sbjct: 145 TKAGLLEL 152>NP_005886 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>NP_001073333 Length = 747 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TQAGLMEL 9 T+AGL+EL Sbjct: 145 TKAGLLEL 152>XP_005266224 Length = 1307 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 414 TQAGLLE 420>XP_006719803 Length = 1407 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 514 TQAGLLE 520>XP_005266222 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_005266221 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_006719802 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_006719801 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_006719800 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_006719799 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_005266219 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TQAGLME 8 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_006719362 Length = 1546 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQA L+EL Sbjct: 276 ATQAELLEL 284>XP_005249957 Length = 682 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TQAGLMEL 9 T+AGL+EL Sbjct: 145 TKAGLLEL 152>NP_006015 Length = 789 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TQAGLMEL 9 T+AGL+EL Sbjct: 145 TKAGLLEL 152>NP_001192136 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQAGL+ L Sbjct: 304 ATQAGLVFL 312>NP_919231 Length = 591 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQAGL+ L Sbjct: 344 ATQAGLVFL 352>NP_001192135 Length = 489 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQAGL+ L Sbjct: 344 ATQAGLVFL 352>NP_001361 Length = 4158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ATQAGLME 8 ATQ GL+E Sbjct: 1155 ATQPGLLE 1162>XP_005261221 Length = 473 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ATQAGLMEL 9 ATQAGL+ L Sbjct: 226 ATQAGLVFL 234>XP_006712019 Length = 4158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ATQAGLME 8 ATQ GL+E Sbjct: 1155 ATQPGLLE 1162>NP_071353 Length = 1181 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TQAGLMEL 9 TQA LMEL Sbjct: 706 TQAYLMEL 713>XP_005257627 Length = 1013 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TQAGLMEL 9 TQA LMEL Sbjct: 538 TQAYLMEL 545>NP_002793 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TQAGLMEL 9 T+AGLM L Sbjct: 400 TEAGLMAL 407>NP_115499 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ATQAGL 6 ATQAGL Sbjct: 105 ATQAGL 110>NP_954648 Length = 583 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ATQAGL 6 ATQAGL Sbjct: 55 ATQAGL 60>NP_954649 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ATQAGL 6 ATQAGL Sbjct: 105 ATQAGL 110>NP_001274103 Length = 1582 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QAGLMEL 9 QAG++EL Sbjct: 870 QAGILEL 876>NP_000343 Length = 1581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QAGLMEL 9 QAG++EL Sbjct: 869 QAGILEL 875>NP_001271271 Length = 177 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ATQAGL 6 ATQAGL Sbjct: 135 ATQAGL 140>XP_006718349 Length = 1646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QAGLMEL 9 QAG++EL Sbjct: 869 QAGILEL 875Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.123 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 391,108 Number of extensions: 355 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |