Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1135 NP_444254 18 1135 NP_444253 18 1135 NP_444255 18 1135 XP_005247551 18 1135 XP_005247550 18 1135 XP_006713712 18 1135 XP_005247549 18 1135 NP_001077415 17 2528 XP_005264468 17 2528 XP_005264467 17 2528 NP_653337 17 2528 NP_689982 17 3301 XP_006722779 17 3301 XP_006722778 17 3301 XP_005259585 17 3301 XP_006722777 17 3301 NP_071394 17 4312 NP_001177410 17 4312 NP_997244 16 5631 NP_056141 16 5631 NP_001164108 16 5631 NP_001004729 16 5631 NP_055764 16 5631 XP_005277570 16 5631 XP_005277569 16 5631 XP_006711309 16 5631 XP_005277568 16 5631 XP_005277567 16 5631 NP_000194 16 7355 NP_001243725 16 7355 NP_612154 16 7355 NP_060876 16 7355 NP_004523 16 7355 NP_001248327 16 7355 NP_002551 16 7355 XP_006713944 16 7355 NP_055414 15 9605 NP_001071107 15 9605 NP_957516 15 9605 NP_872301 15 9605 NP_803182 15 9605 NP_945343 15 9605 XP_006718928 15 9605 XP_006718829 15 9605>NP_444256 Length = 1794 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1313 ATCRSTSFN 1321>NP_444254 Length = 1845 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1313 ATCRSTSFN 1321>NP_444253 Length = 1914 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1382 ATCRSTSFN 1390>NP_444255 Length = 1863 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1382 ATCRSTSFN 1390>XP_005247551 Length = 1855 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1323 ATCRSTSFN 1331>XP_005247550 Length = 1856 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1392 ATCRSTSFN 1400>XP_006713712 Length = 1923 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1392 ATCRSTSFN 1400>XP_005247549 Length = 1924 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATGRSTSFN 9 AT RSTSFN Sbjct: 1392 ATCRSTSFN 1400>NP_001077415 Length = 343 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATGRSTSF 8 ATG+ST+F Sbjct: 84 ATGKSTAF 91>XP_005264468 Length = 370 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATGRSTSF 8 ATG+ST+F Sbjct: 111 ATGKSTAF 118>XP_005264467 Length = 399 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATGRSTSF 8 ATG+ST+F Sbjct: 69 ATGKSTAF 76>NP_653337 Length = 441 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ATGRSTSF 8 ATG+ST+F Sbjct: 111 ATGKSTAF 118>NP_689982 Length = 453 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR SFN Sbjct: 127 STGRRVSFN 135>XP_006722779 Length = 335 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR SFN Sbjct: 173 STGRRVSFN 181>XP_006722778 Length = 499 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR SFN Sbjct: 173 STGRRVSFN 181>XP_005259585 Length = 705 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR SFN Sbjct: 127 STGRRVSFN 135>XP_006722777 Length = 751 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR SFN Sbjct: 173 STGRRVSFN 181>NP_071394 Length = 1339 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TGRSTSF 8 TGR TSF Sbjct: 793 TGRGTSF 799>NP_001177410 Length = 1275 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TGRSTSF 8 TGR TSF Sbjct: 729 TGRGTSF 735>NP_997244 Length = 3169 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TGRSTSF 8 TG STSF Sbjct: 14 TGNSTSF 20>NP_056141 Length = 1071 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 926 GRSKSFN 932>NP_001164108 Length = 1070 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 925 GRSKSFN 931>NP_001004729 Length = 311 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 A GRS +FN Sbjct: 232 AKGRSKAFN 240>NP_055764 Length = 614 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 ATG S +FN Sbjct: 190 ATGTSPTFN 198>XP_005277570 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 773 GRSKSFN 779>XP_005277569 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 773 GRSKSFN 779>XP_006711309 Length = 973 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 926 GRSKSFN 932>XP_005277568 Length = 1070 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 925 GRSKSFN 931>XP_005277567 Length = 1071 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRSTSFN 9 GRS SFN Sbjct: 926 GRSKSFN 932>NP_000194 Length = 653 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR S+N Sbjct: 102 STGRGLSYN 110>NP_001243725 Length = 404 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR +FN Sbjct: 161 STGRCVAFN 169>NP_612154 Length = 1125 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ATGRSTSF 8 +TGR T+F Sbjct: 118 STGRGTTF 125>NP_060876 Length = 5412 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ATGRSTSF 8 +TGR T+F Sbjct: 4405 STGRGTTF 4412>NP_004523 Length = 1176 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ATGRSTSF 8 +TGR T+F Sbjct: 169 STGRGTTF 176>NP_001248327 Length = 341 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR +FN Sbjct: 145 STGRCVAFN 153>NP_002551 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR +FN Sbjct: 145 STGRCVAFN 153>XP_006713944 Length = 722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TGR S+N Sbjct: 102 STGRGLSYN 110>NP_055414 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TG STS N Sbjct: 548 STGASTSTN 556>NP_001071107 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 A+G+ T FN Sbjct: 151 ASGKVTDFN 159>NP_957516 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TG STS N Sbjct: 548 STGASTSTN 556>NP_872301 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 A+G+ T FN Sbjct: 163 ASGKVTDFN 171>NP_803182 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 +TG STS N Sbjct: 548 STGASTSTN 556>NP_945343 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GRSTSFN 9 GR+TSF+ Sbjct: 503 GRATSFD 509>XP_006718928 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 A+G+ T FN Sbjct: 151 ASGKVTDFN 159>XP_006718829 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ATGRSTSFN 9 A+G+ T FN Sbjct: 157 ASGKVTDFN 165Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.113 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 494,830 Number of extensions: 830 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |