Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 21 229 NP_001075109 21 229 NP_055592 17 3301 XP_005273417 17 3301 NP_001258625 17 4312 NP_001258627 17 4312 NP_004290 17 4312 NP_001258628 17 4312 NP_001258626 17 4312 NP_149419 17 4312 NP_001004756 16 5631 NP_001005172 16 5631 NP_079014 16 5631 NP_001005171 16 5631 XP_005253994 16 5631 NP_001245240 16 7355 NP_115989 16 7355 NP_001156506 15 9605 NP_065812 15 9605 NP_004439 15 9605 NP_001276865 15 9605 NP_001005862 15 9605 NP_056044 15 9605 NP_001230925 15 9605 NP_689819 15 9605 NP_001027 15 9605 NP_056506 15 9605 NP_001165697 15 9605 NP_001165696 15 9605 NP_849193 15 9605 XP_005257197 15 9605 XP_006721828 15 9605 XP_005256625 15 9605 XP_005256624 15 9605 XP_005256622 15 9605 XP_006721555 15 9605 XP_006721554 15 9605 XP_006713080 15 9605>NP_008835 Length = 4128 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 AS+AFNNIY Sbjct: 1078 ASLAFNNIY 1086>NP_001075109 Length = 4097 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 AS+AFNNIY Sbjct: 1078 ASLAFNNIY 1086>NP_055592 Length = 1524 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 SVA NNIY Sbjct: 366 SVANNNIY 373>XP_005273417 Length = 1487 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 SVA NNIY Sbjct: 366 SVANNNIY 373>NP_001258625 Length = 752 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 A+VAF+N++ Sbjct: 470 ATVAFDNVH 478>NP_001258627 Length = 726 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 A+VAF+N++ Sbjct: 444 ATVAFDNVH 452>NP_004290 Length = 753 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 A+VAF+N++ Sbjct: 471 ATVAFDNVH 479>NP_001258628 Length = 713 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 A+VAF+N++ Sbjct: 431 ATVAFDNVH 439>NP_001258626 Length = 712 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 A+VAF+N++ Sbjct: 430 ATVAFDNVH 438>NP_149419 Length = 310 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ASVAFNNIY 9 A + FN+IY Sbjct: 187 ADITFNHIY 195>NP_001004756 Length = 326 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 VAFNNIY 9 + FNN+Y Sbjct: 204 ITFNNLY 210>NP_001005172 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFNNIY 9 +FNNIY Sbjct: 195 SFNNIY 200>NP_079014 Length = 205 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ASVAFNNIY 9 A+VAF N++ Sbjct: 151 AAVAFQNLF 159>NP_001005171 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFNNIY 9 +FNNIY Sbjct: 195 SFNNIY 200>XP_005253994 Length = 175 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ASVAFNNIY 9 A+VAF N++ Sbjct: 121 AAVAFQNLF 129>NP_001245240 Length = 524 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVAFNNIY 9 S+A NN Y Sbjct: 480 SIAINNAY 487>NP_115989 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNNIY Sbjct: 311 FNNIY 315>NP_001156506 Length = 1177 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VAFNNIY 9 V+FN++Y Sbjct: 644 VSFNSVY 650>NP_065812 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VAFNNIY 9 V+FN++Y Sbjct: 802 VSFNSVY 808>NP_004439 Length = 1255 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 S AF+N+Y Sbjct: 1214 SPAFDNLY 1221>NP_001276865 Length = 1240 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 S AF+N+Y Sbjct: 1199 SPAFDNLY 1206>NP_001005862 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 S AF+N+Y Sbjct: 1184 SPAFDNLY 1191>NP_056044 Length = 1309 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1008 FNNVY 1012>NP_001230925 Length = 4865 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASVAFNNIY 9 A VAF +IY Sbjct: 1825 AIVAFGDIY 1833>NP_689819 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 196 FNNVY 200>NP_001027 Length = 4870 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASVAFNNIY 9 A VAF +IY Sbjct: 1825 AIVAFGDIY 1833>NP_056506 Length = 1092 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ASVAFNNIY 9 +SV+F +IY Sbjct: 387 SSVSFTDIY 395>NP_001165697 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 164 FNNVY 168>NP_001165696 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 196 FNNVY 200>NP_849193 Length = 826 Score = 15.4 bits (28), Expect = 9605 Identities = 3/9 (33%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 +++AF+N++ Sbjct: 472 SAIAFSNVF 480>XP_005257197 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 S AF+N+Y Sbjct: 1184 SPAFDNLY 1191>XP_006721828 Length = 1336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVAFNNIY 9 S AF+N+Y Sbjct: 1295 SPAFDNLY 1302>XP_005256625 Length = 1347 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1046 FNNVY 1050>XP_005256624 Length = 1348 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1047 FNNVY 1051>XP_005256622 Length = 1383 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1082 FNNVY 1086>XP_006721555 Length = 1444 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1143 FNNVY 1147>XP_006721554 Length = 1445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 5 FNNIY 9 FNN+Y Sbjct: 1144 FNNVY 1148>XP_006713080 Length = 804 Score = 15.4 bits (28), Expect = 9605 Identities = 3/9 (33%), Positives = 9/9 (100%) Query: 1 ASVAFNNIY 9 +++AF+N++ Sbjct: 472 SAIAFSNVF 480Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 387,366 Number of extensions: 545 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |