Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_064450                                                              17    2528
XP_005273257                                                           17    2528
NP_073740                                                              17    3301
NP_001180268                                                           17    3301
NP_055874                                                              17    3301
NP_065796                                                              17    3301
XP_006720784                                                           17    3301
XP_006720783                                                           17    3301
XP_006720782                                                           17    3301
XP_006720781                                                           17    3301
XP_005254772                                                           17    3301
XP_005254771                                                           17    3301
XP_006720780                                                           17    3301
XP_005254769                                                           17    3301
XP_005254770                                                           17    3301
XP_005254765                                                           17    3301
XP_005254767                                                           17    3301
XP_006720779                                                           17    3301
XP_005254768                                                           17    3301
XP_005254764                                                           17    3301
XP_005249302                                                           17    3301
NP_000529                                                              16    7355
NP_001035203                                                           15    9605
NP_074035                                                              15    9605
NP_001035202                                                           15    9605
NP_002465                                                              15    9605
NP_001028198                                                           15    9605
NP_115486                                                              15    9605
NP_001264                                                              15    9605
XP_005259736                                                           15    9605
XP_005259735                                                           15    9605
XP_005259734                                                           15    9605
XP_005259733                                                           15    9605
XP_005259732                                                           15    9605
XP_006719025                                                           15    9605
XP_005253725                                                           15    9605
XP_006719024                                                           15    9605
XP_006719023                                                           15    9605
XP_006719022                                                           15    9605
XP_006719021                                                           15    9605
>NP_064450
          Length = 1722

 Score = 17.3 bits (33), Expect =  2528
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   ASVAAAAKK 9
           ASVAA AKK
Sbjct: 460 ASVAAPAKK 468
>XP_005273257
          Length = 1726

 Score = 17.3 bits (33), Expect =  2528
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   ASVAAAAKK 9
           ASVAA AKK
Sbjct: 460 ASVAAPAKK 468
>NP_073740
          Length = 602

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 1  ASVAAAAKK 9
          A++AAAAKK
Sbjct: 2  AALAAAAKK 10
>NP_001180268
          Length = 552

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 1  ASVAAAAKK 9
          A++AAAAKK
Sbjct: 2  AALAAAAKK 10
>NP_055874
          Length = 2542

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>NP_065796
          Length = 985

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 1  ASVAAAAKK 9
          ASVAAAA++
Sbjct: 3  ASVAAAARR 11
>XP_006720784
          Length = 2502

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2275 ASIEAAAKK 2283
>XP_006720783
          Length = 2512

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2270 ASIEAAAKK 2278
>XP_006720782
          Length = 2517

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2275 ASIEAAAKK 2283
>XP_006720781
          Length = 2542

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254772
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254771
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_006720780
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254769
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254770
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254765
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254767
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_006720779
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254768
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005254764
          Length = 2557

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ASVAAAAKK 9
            AS+ AAAKK
Sbjct: 2315 ASIEAAAKK 2323
>XP_005249302
          Length = 888

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 1  ASVAAAAKK 9
          ASVAAAA++
Sbjct: 3  ASVAAAARR 11
>NP_000529
          Length = 272

 Score = 15.8 bits (29), Expect =  7355
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  ASVAAAAKK 9
          ASVAAAA +
Sbjct: 35 ASVAAAASQ 43
>NP_001035203
          Length = 1979

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2    SVAAAAKK 9
            ++AAAAKK
Sbjct: 1620 ALAAAAKK 1627
>NP_074035
          Length = 1938

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2    SVAAAAKK 9
            ++AAAAKK
Sbjct: 1613 ALAAAAKK 1620
>NP_001035202
          Length = 1945

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2    SVAAAAKK 9
            ++AAAAKK
Sbjct: 1620 ALAAAAKK 1627
>NP_002465
          Length = 1972

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2    SVAAAAKK 9
            ++AAAAKK
Sbjct: 1613 ALAAAAKK 1620
>NP_001028198
          Length = 620

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 528 ASVAAAA 534
>NP_115486
          Length = 542

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1  ASVAAAA 7
          ASVAAAA
Sbjct: 30 ASVAAAA 36
>NP_001264
          Length = 1912

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 224 ASVAAAA 230
>XP_005259736
          Length = 440

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 348 ASVAAAA 354
>XP_005259735
          Length = 626

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 534 ASVAAAA 540
>XP_005259734
          Length = 644

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 552 ASVAAAA 558
>XP_005259733
          Length = 655

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 563 ASVAAAA 569
>XP_005259732
          Length = 661

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 569 ASVAAAA 575
>XP_006719025
          Length = 1902

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 224 ASVAAAA 230
>XP_005253725
          Length = 1905

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 217 ASVAAAA 223
>XP_006719024
          Length = 1908

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 217 ASVAAAA 223
>XP_006719023
          Length = 1914

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 224 ASVAAAA 230
>XP_006719022
          Length = 1915

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 224 ASVAAAA 230
>XP_006719021
          Length = 1940

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   ASVAAAA 7
           ASVAAAA
Sbjct: 224 ASVAAAA 230
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.293   0.0930    0.194 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 230,258
Number of extensions: 197
Number of successful extensions: 40
Number of sequences better than 10000.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.3 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package