Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_060496 17 2528 XP_005274154 17 2528 NP_005742 17 3301 NP_671714 17 3301 NP_112590 17 3301 XP_006715890 17 3301 XP_005250160 17 3301 XP_005250159 17 3301 NP_001136407 17 3301 NP_055288 17 4312 NP_001072 17 4312 NP_036423 16 5631 XP_006719768 16 5631 NP_057726 16 7355 NP_001094383 16 7355 NP_056012 16 7355 NP_065713 16 7355 NP_001273193 16 7355 NP_001273195 16 7355 NP_036617 16 7355 NP_001230056 16 7355 NP_001273194 16 7355 XP_005254495 16 7355 XP_006720155 16 7355 XP_006720154 16 7355 XP_006720153 16 7355 XP_006720152 16 7355 XP_006720151 16 7355 XP_006720150 16 7355 XP_005267520 16 7355 XP_006720149 16 7355 XP_005267519 16 7355 XP_006720148 16 7355 XP_005249299 16 7355 NP_008835 15 9605 NP_001075109 15 9605 NP_001274324 15 9605 XP_006712547 15 9605>NP_060496 Length = 963 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ASKLQVLLQ 9 A+KLQ++LQ Sbjct: 187 ANKLQIMLQ 195>XP_005274154 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ASKLQVLLQ 9 A+KLQ++LQ Sbjct: 187 ANKLQIMLQ 195>NP_005742 Length = 3907 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 ASKLQVL Q Sbjct: 3523 ASKLQVLPQ 3531>NP_671714 Length = 3899 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 ASKLQVL Q Sbjct: 3515 ASKLQVLPQ 3523>NP_112590 Length = 206 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 AS +QVLLQ Sbjct: 5 ASNIQVLLQ 13>XP_006715890 Length = 3860 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 ASKLQVL Q Sbjct: 3476 ASKLQVLPQ 3484>XP_005250160 Length = 3939 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 ASKLQVL Q Sbjct: 3555 ASKLQVLPQ 3563>XP_005250159 Length = 3952 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 ASKLQVL Q Sbjct: 3568 ASKLQVLPQ 3576>NP_001136407 Length = 193 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 AS +QVLLQ Sbjct: 5 ASNIQVLLQ 13>NP_055288 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 ASKLQVLL 8 ASKLQVL+ Sbjct: 104 ASKLQVLV 111>NP_001072 Length = 3623 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 ASKLQVLL 8 +SKLQVLL Sbjct: 1363 SSKLQVLL 1370>NP_036423 Length = 2120 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 AS+LQ LLQ Sbjct: 1819 ASRLQELLQ 1827>XP_006719768 Length = 2120 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASKLQVLLQ 9 AS+LQ LLQ Sbjct: 1819 ASRLQELLQ 1827>NP_057726 Length = 3674 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASKLQVLLQ 9 A KLQ +LQ Sbjct: 2472 AQKLQAMLQ 2480>NP_001094383 Length = 904 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>NP_056012 Length = 889 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>NP_065713 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLQVLLQ 9 SKL +LLQ Sbjct: 229 SKLHILLQ 236>NP_001273193 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLQVLLQ 9 SKL +LLQ Sbjct: 232 SKLHILLQ 239>NP_001273195 Length = 393 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLQVLLQ 9 SKL +LLQ Sbjct: 179 SKLHILLQ 186>NP_036617 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 SK++VLLQ Sbjct: 74 SKIRVLLQ 81>NP_001230056 Length = 814 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 42 NKLQIMLQ 49>NP_001273194 Length = 408 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLQVLLQ 9 SKL +LLQ Sbjct: 229 SKLHILLQ 236>XP_005254495 Length = 3694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASKLQVLLQ 9 A KLQ +LQ Sbjct: 2492 AQKLQAMLQ 2500>XP_006720155 Length = 881 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720154 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720153 Length = 905 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720152 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720151 Length = 915 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720150 Length = 918 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_005267520 Length = 921 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720149 Length = 922 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_005267519 Length = 925 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_006720148 Length = 926 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 +KLQ++LQ Sbjct: 109 NKLQIMLQ 116>XP_005249299 Length = 405 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLQVLLQ 9 SKL +LLQ Sbjct: 229 SKLHILLQ 236>NP_008835 Length = 4128 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 SKL++LLQ Sbjct: 3047 SKLKLLLQ 3054>NP_001075109 Length = 4097 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SKLQVLLQ 9 SKL++LLQ Sbjct: 3047 SKLKLLLQ 3054>NP_001274324 Length = 1688 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ASKLQVLL 8 ASK++VLL Sbjct: 704 ASKVEVLL 711>XP_006712547 Length = 1674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ASKLQVLL 8 ASK++VLL Sbjct: 701 ASKVEVLL 708Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.128 0.284 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 288,983 Number of extensions: 604 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |