Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 19 869 NP_444254 19 869 NP_444253 19 869 NP_444255 19 869 XP_005247551 19 869 XP_005247550 19 869 XP_006713712 19 869 XP_005247549 19 869 NP_056957 17 4312 NP_001248396 17 4312 NP_115517 17 4312 XP_005265249 17 4312 XP_006713247 17 4312 XP_006713246 17 4312 XP_005265248 17 4312 NP_001138432 16 5631 NP_001073280 15 9605 NP_005210 15 9605 NP_001003891 15 9605 NP_056973 15 9605 XP_005261689 15 9605 XP_006724326 15 9605 XP_005268441 15 9605>NP_444256 Length = 1794 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1028 APAFKQKLQ 1036>NP_444254 Length = 1845 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1028 APAFKQKLQ 1036>NP_444253 Length = 1914 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1097 APAFKQKLQ 1105>NP_444255 Length = 1863 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1097 APAFKQKLQ 1105>XP_005247551 Length = 1855 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1038 APAFKQKLQ 1046>XP_005247550 Length = 1856 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1107 APAFKQKLQ 1115>XP_006713712 Length = 1923 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1107 APAFKQKLQ 1115>XP_005247549 Length = 1924 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AFKQKLQ Sbjct: 1107 APAFKQKLQ 1115>NP_056957 Length = 856 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AF+Q+LQ Sbjct: 76 AEAFQQRLQ 84>NP_001248396 Length = 504 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SAFKQKLQ 9 SA+K+KLQ Sbjct: 92 SAYKKKLQ 99>NP_115517 Length = 558 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SAFKQKLQ 9 SA+K+KLQ Sbjct: 146 SAYKKKLQ 153>XP_005265249 Length = 856 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AF+Q+LQ Sbjct: 76 AEAFQQRLQ 84>XP_006713247 Length = 856 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AF+Q+LQ Sbjct: 76 AEAFQQRLQ 84>XP_006713246 Length = 856 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AF+Q+LQ Sbjct: 76 AEAFQQRLQ 84>XP_005265248 Length = 856 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASAFKQKLQ 9 A AF+Q+LQ Sbjct: 76 AEAFQQRLQ 84>NP_001138432 Length = 544 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ASAFKQK 7 ASAFK+K Sbjct: 501 ASAFKEK 507>NP_001073280 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SAFKQKLQ 9 S F+QKLQ Sbjct: 498 SDFEQKLQ 505>NP_005210 Length = 1272 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SAFKQKLQ 9 S F+QKLQ Sbjct: 507 SDFEQKLQ 514>NP_001003891 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ASAFKQKL 8 ++AF+QKL Sbjct: 12 STAFRQKL 19>NP_056973 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ASAFKQKL 8 ++AF+QKL Sbjct: 12 STAFRQKL 19>XP_005261689 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ASAFKQKL 8 ++AF+QKL Sbjct: 12 STAFRQKL 19>XP_006724326 Length = 717 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ASAFKQKL 8 ++AF+QKL Sbjct: 12 STAFRQKL 19>XP_005268441 Length = 1250 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SAFKQKLQ 9 S F+QKLQ Sbjct: 507 SDFEQKLQ 514Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.116 0.276 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 470,239 Number of extensions: 684 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |