Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001008487 17 2528 NP_001008486 17 2528 NP_001008485 17 2528 NP_060306 17 2528 NP_001157947 17 2528 XP_005247622 17 2528 XP_005247621 17 2528 XP_006713744 17 2528 XP_005247620 17 2528 XP_005247619 17 2528 XP_005247618 17 2528 XP_005247617 17 2528 XP_005247616 17 2528 NP_006197 17 4312 NP_776253 17 4312 XP_006714104 17 4312 XP_005265800 17 4312 XP_006714103 17 4312 XP_006714102 17 4312 XP_005245126 17 4312 NP_003092 15 9605 NP_001239441 15 9605 NP_001239440 15 9605 XP_005271680 15 9605 XP_005271679 15 9605 XP_005271678 15 9605 XP_005271676 15 9605 XP_005271681 15 9605 XP_006718955 15 9605 XP_006718954 15 9605 XP_006718953 15 9605 XP_006718950 15 9605 XP_005273894 15 9605 NP_878253 15 9605>NP_001008487 Length = 461 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 349 ARVLLLLVV 357>NP_001008486 Length = 471 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 339 ARVLLLLVV 347>NP_001008485 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>NP_060306 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>NP_001157947 Length = 370 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 258 ARVLLLLVV 266>XP_005247622 Length = 481 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 349 ARVLLLLVV 357>XP_005247621 Length = 502 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 390 ARVLLLLVV 398>XP_006713744 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>XP_005247620 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>XP_005247619 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>XP_005247618 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 375 ARVLLLLVV 383>XP_005247617 Length = 522 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 390 ARVLLLLVV 398>XP_005247616 Length = 522 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ARVLVLLVI 9 ARVL+LLV+ Sbjct: 390 ARVLLLLVV 398>NP_006197 Length = 1089 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 A VLVLLVI Sbjct: 529 AAVLVLLVI 537>NP_776253 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 ARVL LLV+ Sbjct: 409 ARVLFLLVV 417>XP_006714104 Length = 832 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 A VLVLLVI Sbjct: 554 AAVLVLLVI 562>XP_005265800 Length = 1089 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 A VLVLLVI Sbjct: 529 AAVLVLLVI 537>XP_006714103 Length = 1111 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 A VLVLLVI Sbjct: 551 AAVLVLLVI 559>XP_006714102 Length = 1114 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 A VLVLLVI Sbjct: 554 AAVLVLLVI 562>XP_005245126 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ARVLVLLVI 9 ARVL LLV+ Sbjct: 409 ARVLFLLVV 417>NP_003092 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ARVLVLLV 8 ARVLVL V Sbjct: 359 ARVLVLCV 366>NP_001239441 Length = 485 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ARVLVLLV 8 ARVLVL V Sbjct: 294 ARVLVLCV 301>NP_001239440 Length = 492 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ARVLVLLV 8 ARVLVL V Sbjct: 301 ARVLVLCV 308>XP_005271680 Length = 713 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 590 VLVLLVI 596>XP_005271679 Length = 713 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 590 VLVLLVI 596>XP_005271678 Length = 713 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 590 VLVLLVI 596>XP_005271676 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 630 VLVLLVI 636>XP_005271681 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 649 VLVLLVI 655>XP_006718955 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 673 VLVLLVI 679>XP_006718954 Length = 877 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 773 VLVLLVI 779>XP_006718953 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 758 VLVLLVI 764>XP_006718950 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLVLLVI 9 VLVLLVI Sbjct: 773 VLVLLVI 779>XP_005273894 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVLVLLVI 9 ++L+LLVI Sbjct: 69 KILILLVI 76>NP_878253 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVLVLLVI 9 ++L+LLVI Sbjct: 69 KILILLVI 76Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.355 0.167 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 245,196 Number of extensions: 316 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |