Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 509 XP_006718908 20 509 XP_005271621 20 509 XP_006718907 20 509 XP_006718906 20 509 XP_005271619 20 509 XP_005271618 20 509 NP_065717 17 3301 XP_005266006 17 3301 XP_005266005 17 3301 XP_006714959 17 3301 XP_006714958 17 3301 XP_005266004 17 3301 NP_443137 17 4312 XP_006712292 17 4312 XP_005246323 17 4312 XP_005246322 17 4312 XP_006712291 17 4312 XP_005246320 17 4312 NP_689831 16 7355 NP_004975 16 7355 NP_004513 16 7355 NP_004512 16 7355 NP_001171478 16 7355 NP_057323 16 7355 XP_005256732 16 7355 NP_002854 15 9605 NP_872434 15 9605 XP_006717006 15 9605 XP_006713686 15 9605 XP_006713685 15 9605 XP_006713684 15 9605 XP_006713683 15 9605 XP_006713682 15 9605 XP_006713681 15 9605 XP_006713680 15 9605 XP_005247488 15 9605 XP_005275805 15 9605 NP_001004701 15 9605>NP_000042 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 2262 ARTFKNTQL 2270>XP_006718908 Length = 1708 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 914 ARTFKNTQL 922>XP_005271621 Length = 2708 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 1914 ARTFKNTQL 1922>XP_006718907 Length = 3050 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 2256 ARTFKNTQL 2264>XP_006718906 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 2262 ARTFKNTQL 2270>XP_005271619 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 2262 ARTFKNTQL 2270>XP_005271618 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 ART KNTQL Sbjct: 2262 ARTFKNTQL 2270>NP_065717 Length = 481 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 312 RTLKNTDI 319>XP_005266006 Length = 301 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 132 RTLKNTDI 139>XP_005266005 Length = 301 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 132 RTLKNTDI 139>XP_006714959 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 276 RTLKNTDI 283>XP_006714958 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 276 RTLKNTDI 283>XP_005266004 Length = 484 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKNT + Sbjct: 315 RTLKNTDI 322>NP_443137 Length = 1092 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>XP_006712292 Length = 641 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>XP_005246323 Length = 1069 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>XP_005246322 Length = 1084 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>XP_006712291 Length = 1086 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>XP_005246320 Length = 1087 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RTLKNTQL 9 RTLKN++L Sbjct: 207 RTLKNSRL 214>NP_689831 Length = 710 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 +RTLKN+ L Sbjct: 213 SRTLKNSLL 221>NP_004975 Length = 1032 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ARTLKNT 7 A+T+KNT Sbjct: 324 AKTIKNT 330>NP_004513 Length = 957 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ARTLKNT 7 A+T+KNT Sbjct: 324 AKTIKNT 330>NP_004512 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ARTLKNT 7 A+T+KNT Sbjct: 322 AKTIKNT 328>NP_001171478 Length = 710 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 +RTLKN+ L Sbjct: 213 SRTLKNSLL 221>NP_057323 Length = 3530 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 ARTLKNTQL 9 ARTL TQL Sbjct: 2203 ARTLPPTQL 2211>XP_005256732 Length = 3531 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 ARTLKNTQL 9 ARTL TQL Sbjct: 2204 ARTLPPTQL 2212>NP_002854 Length = 847 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTL+NT + Sbjct: 94 RTLQNTMI 101>NP_872434 Length = 611 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 419 SHTLKHTQI 427>XP_006717006 Length = 1760 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RTLKNTQL 9 RTLKN+ L Sbjct: 15 RTLKNSLL 22>XP_006713686 Length = 611 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 419 SHTLKHTQI 427>XP_006713685 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_006713684 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_006713683 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_006713682 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_006713681 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_006713680 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_005247488 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ARTLKNTQL 9 + TLK+TQ+ Sbjct: 420 SHTLKHTQI 428>XP_005275805 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RTLKNTQ 8 RTL NTQ Sbjct: 39 RTLGNTQ 45>NP_001004701 Length = 310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKNTQL 9 TLKNT++ Sbjct: 286 TLKNTEV 292Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.119 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 383,433 Number of extensions: 521 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |