Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 509 XP_006718907 20 509 XP_006718906 20 509 XP_005271619 20 509 XP_005271618 20 509 NP_001277239 16 7355 NP_001277238 16 7355 NP_001894 16 7355 NP_001277241 16 7355 NP_001277236 16 7355 NP_001253981 16 7355 XP_005257983 16 7355 XP_005271956 16 7355 XP_006714599 16 7355 NP_775259 16 7355 NP_001028748 16 7355 NP_001420 15 9605 XP_006724228 15 9605 XP_006719786 15 9605 XP_005271472 15 9605 XP_005271471 15 9605 XP_005271470 15 9605 XP_005271469 15 9605 XP_006711671 15 9605 XP_006711670 15 9605 XP_005245629 15 9605 NP_689800 15 9605>NP_000042 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARIIHAATK 9 ARIIHA TK Sbjct: 188 ARIIHAVTK 196>XP_006718907 Length = 3050 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARIIHAATK 9 ARIIHA TK Sbjct: 188 ARIIHAVTK 196>XP_006718906 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARIIHAATK 9 ARIIHA TK Sbjct: 188 ARIIHAVTK 196>XP_005271619 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARIIHAATK 9 ARIIHA TK Sbjct: 188 ARIIHAVTK 196>XP_005271618 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ARIIHAATK 9 ARIIHA TK Sbjct: 188 ARIIHAVTK 196>NP_001277239 Length = 783 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 427 ARVIHVVT 434>NP_001277238 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 447 ARVIHVVT 454>NP_001894 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 550 ARVIHVVT 557>NP_001277241 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 180 ARVIHVVT 187>NP_001277236 Length = 841 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 550 ARVIHVVT 557>NP_001253981 Length = 929 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IIHAATK 9 +IHA+TK Sbjct: 445 LIHASTK 451>XP_005257983 Length = 850 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IIHAATK 9 +IHA+TK Sbjct: 445 LIHASTK 451>XP_005271956 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 180 ARVIHVVT 187>XP_006714599 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ARIIHAAT 8 AR+IH T Sbjct: 550 ARVIHVVT 557>NP_775259 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IIHAATK 9 +IHA+TK Sbjct: 445 LIHASTK 451>NP_001028748 Length = 929 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IIHAATK 9 +IHA+TK Sbjct: 445 LIHASTK 451>NP_001420 Length = 2414 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 RIIHAATK 9 R++HA+ K Sbjct: 1324 RVVHASDK 1331>XP_006724228 Length = 2388 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 RIIHAATK 9 R++HA+ K Sbjct: 1298 RVVHASDK 1305>XP_006719786 Length = 122 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ARIIHAATK 9 ARI+H A + Sbjct: 89 ARILHQAAR 97>XP_005271472 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IIHAATK 9 +IH ATK Sbjct: 205 LIHTATK 211>XP_005271471 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IIHAATK 9 +IH ATK Sbjct: 205 LIHTATK 211>XP_005271470 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IIHAATK 9 +IH ATK Sbjct: 174 LIHTATK 180>XP_005271469 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IIHAATK 9 +IH ATK Sbjct: 187 LIHTATK 193>XP_006711671 Length = 2153 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 ARIIHA 6 ARI+HA Sbjct: 277 ARIVHA 282>XP_006711670 Length = 2161 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 ARIIHA 6 ARI+HA Sbjct: 277 ARIVHA 282>XP_005245629 Length = 2164 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 ARIIHA 6 ARI+HA Sbjct: 277 ARIVHA 282>NP_689800 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IIHAATK 9 +IH ATK Sbjct: 205 LIHTATK 211Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 439,300 Number of extensions: 505 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |