Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055876 17 3301 XP_006716804 17 3301 NP_001159579 15 9605 NP_005509 15 9605 NP_201586 15 9605>NP_055876 Length = 1056 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 ARFSTAS 7 ARFSTAS Sbjct: 996 ARFSTAS 1002>XP_006716804 Length = 1089 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 ARFSTAS 7 ARFSTAS Sbjct: 1029 ARFSTAS 1035>NP_001159579 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RFSTAS 7 RFSTAS Sbjct: 35 RFSTAS 40>NP_005509 Length = 508 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RFSTAS 7 RFSTAS Sbjct: 35 RFSTAS 40>NP_201586 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RFSTAS 7 RFSTAS Sbjct: 21 RFSTAS 26Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.114 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 247,131 Number of extensions: 202 Number of successful extensions: 5 Number of sequences better than 10000.0: 5 Number of HSP's gapped: 5 Number of HSP's successfully gapped: 5 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |