Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1482 NP_001155130 16 7355 NP_001155131 16 7355 NP_001155128 16 7355 NP_001155129 16 7355 NP_001123644 16 7355 NP_001123645 16 7355 NP_005366 16 7355 XP_006715558 16 7355 NP_006039 15 9605 NP_001099032 15 9605 NP_055733 15 9605 NP_003743 15 9605 NP_001254503 15 9605 NP_001273407 15 9605 NP_001032897 15 9605 NP_057149 15 9605 NP_001186071 15 9605 NP_001093131 15 9605 XP_005255592 15 9605 XP_006720498 15 9605 XP_005263479 15 9605>NP_004295 Length = 1620 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AREILLMST 9 AREILLM T Sbjct: 372 AREILLMPT 380>NP_001155130 Length = 745 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_001155131 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_001155128 Length = 758 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_001155129 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_001123644 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_001123645 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_005366 Length = 640 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>XP_006715558 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+LLMST Sbjct: 299 ELLLMST 305>NP_006039 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+L+MST Sbjct: 208 EVLMMST 214>NP_001099032 Length = 1302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+L+MST Sbjct: 208 EVLMMST 214>NP_055733 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 REILLMS 8 REI+LMS Sbjct: 336 REIVLMS 342>NP_003743 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 585 ARDLMLMS 592>NP_001254503 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 585 ARDLMLMS 592>NP_001273407 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 575 ARDLMLMS 582>NP_001032897 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 585 ARDLMLMS 592>NP_057149 Length = 137 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AREILLMS 8 ARE+LL S Sbjct: 115 AREVLLAS 122>NP_001186071 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 585 ARDLMLMS 592>NP_001093131 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 586 ARDLMLMS 593>XP_005255592 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AREILLMS 8 AR+++LMS Sbjct: 586 ARDLMLMS 593>XP_006720498 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 REILLMS 8 REI+LMS Sbjct: 64 REIVLMS 70>XP_005263479 Length = 1353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EILLMST 9 E+L+MST Sbjct: 208 EVLMMST 214Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.131 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 322,321 Number of extensions: 263 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |