Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_116207 16 5631 NP_945352 16 5631 XP_005266141 16 5631 NP_848638 16 7355 NP_055633 16 7355 NP_004090 16 7355 XP_005277842 16 7355 XP_006718461 16 7355 XP_006718460 16 7355 NP_004623 15 9605 NP_001186779 15 9605 NP_001186778 15 9605 NP_387506 15 9605 NP_057332 15 9605 NP_001129941 15 9605 NP_076432 15 9605 XP_005272546 15 9605 XP_006722863 15 9605 XP_005266307 15 9605 XP_005266306 15 9605 XP_005266305 15 9605 XP_005266304 15 9605 XP_005247785 15 9605 XP_005247784 15 9605 XP_005247783 15 9605 XP_005247782 15 9605 XP_005245537 15 9605 XP_006711590 15 9605>NP_116207 Length = 335 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PVQSQRA 8 PVQ QRA Sbjct: 11 PVQEQRA 17>NP_945352 Length = 184 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 APVQSQRA 8 AP+Q+Q+A Sbjct: 116 APIQNQQA 123>XP_005266141 Length = 184 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 APVQSQRA 8 AP+Q+Q+A Sbjct: 116 APIQNQQA 123>NP_848638 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APVQSQ 6 APVQSQ Sbjct: 22 APVQSQ 27>NP_055633 Length = 1216 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APVQSQ 6 APVQSQ Sbjct: 559 APVQSQ 564>NP_004090 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PVQ QRA+ Sbjct: 200 PVQLQRAM 207>XP_005277842 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APVQSQ 6 APVQSQ Sbjct: 95 APVQSQ 100>XP_006718461 Length = 1247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APVQSQ 6 APVQSQ Sbjct: 559 APVQSQ 564>XP_006718460 Length = 1392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APVQSQ 6 APVQSQ Sbjct: 704 APVQSQ 709>NP_004623 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48>NP_001186779 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48>NP_001186778 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48>NP_387506 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48>NP_057332 Length = 1901 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VQSQRAV 9 VQSQR+V Sbjct: 1235 VQSQRSV 1241>NP_001129941 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 313 APVPSQR 319>NP_076432 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 313 APVPSQR 319>XP_005272546 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 APVQSQRA 8 AP SQRA Sbjct: 50 APAPSQRA 57>XP_006722863 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 APVQSQRA 8 AP SQRA Sbjct: 50 APAPSQRA 57>XP_005266307 Length = 1796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VQSQRAV 9 VQSQR+V Sbjct: 1235 VQSQRSV 1241>XP_005266306 Length = 1824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VQSQRAV 9 VQSQR+V Sbjct: 1235 VQSQRSV 1241>XP_005266305 Length = 1856 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VQSQRAV 9 VQSQR+V Sbjct: 1190 VQSQRSV 1196>XP_005266304 Length = 1873 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VQSQRAV 9 VQSQR+V Sbjct: 1235 VQSQRSV 1241>XP_005247785 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 313 APVPSQR 319>XP_005247784 Length = 569 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 307 APVPSQR 313>XP_005247783 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 313 APVPSQR 319>XP_005247782 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 APVQSQR 7 APV SQR Sbjct: 313 APVPSQR 319>XP_005245537 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48>XP_006711590 Length = 368 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PVQSQRAV 9 PV+S RA+ Sbjct: 41 PVESPRAI 48Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.115 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 442,024 Number of extensions: 705 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |