Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 20 390 NP_001245200 20 390 NP_001161091 20 390 NP_000240 20 390 NP_001161090 20 390 NP_001161089 20 390 NP_001245203 20 390 XP_005265223 20 390 XP_005265221 20 390 XP_005265220 20 390 XP_005265218 20 390 NP_000312 17 4312 NP_002702 17 4312 NP_001018125 16 5631 NP_149075 16 5631 NP_036220 16 5631 XP_005277590 16 5631 XP_006713088 16 5631 XP_006713087 16 5631 XP_005265003 16 5631 XP_006713086 16 5631 XP_006713085 16 5631 XP_006713084 16 5631 NP_001231612 16 7355 NP_000912 16 7355 NP_775822 16 7355 NP_055417 16 7355 XP_006719150 16 7355 XP_006719149 16 7355 XP_006717062 16 7355 XP_006717061 16 7355 XP_005251851 16 7355 XP_005251850 16 7355 NP_060726 15 9605 NP_699179 15 9605 NP_001276903 15 9605 XP_003960167 15 9605 XP_005253925 15 9605 XP_005253924 15 9605 XP_005253923 15 9605 XP_003846269 15 9605 XP_003846670 15 9605 NP_060797 15 9605 NP_036306 15 9605>NP_001245202 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>NP_001245200 Length = 687 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 580 APLFDLAML 588>NP_001161091 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>NP_000240 Length = 756 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 580 APLFDLAML 588>NP_001161090 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>NP_001161089 Length = 658 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 482 APLFDLAML 490>NP_001245203 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>XP_005265223 Length = 415 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 239 APLFDLAML 247>XP_005265221 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>XP_005265220 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 339 APLFDLAML 347>XP_005265218 Length = 687 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 APLFDLVML 9 APLFDL ML Sbjct: 511 APLFDLAML 519>NP_000312 Length = 928 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 APLFDLV 7 +PLFDL+ Sbjct: 567 SPLFDLI 573>NP_002702 Length = 1122 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APLFDL Sbjct: 107 APLFDL 112>NP_001018125 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>NP_149075 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>NP_036220 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 PLFDLVML 9 P+FDL++L Sbjct: 140 PVFDLLIL 147>XP_005277590 Length = 900 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 126 VFDLVML 132>XP_006713088 Length = 1382 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713087 Length = 1432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>XP_005265003 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713086 Length = 1458 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713085 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713084 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LFDLVML 9 +FDLVML Sbjct: 379 VFDLVML 385>NP_001231612 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PLFDLV 7 P+FDLV Sbjct: 373 PIFDLV 378>NP_000912 Length = 1141 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PLFDLV 7 P+FDLV Sbjct: 695 PIFDLV 700>NP_775822 Length = 871 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FDLVML 9 FDLVML Sbjct: 397 FDLVML 402>NP_055417 Length = 1358 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PLFDLVML 9 PLFDL L Sbjct: 257 PLFDLSQL 264>XP_006719150 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PLFDLV 7 P+FDLV Sbjct: 377 PIFDLV 382>XP_006719149 Length = 1087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PLFDLV 7 P+FDLV Sbjct: 695 PIFDLV 700>XP_006717062 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FDLVML 9 FDLVML Sbjct: 339 FDLVML 344>XP_006717061 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FDLVML 9 FDLVML Sbjct: 397 FDLVML 402>XP_005251851 Length = 885 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FDLVML 9 FDLVML Sbjct: 397 FDLVML 402>XP_005251850 Length = 886 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FDLVML 9 FDLVML Sbjct: 397 FDLVML 402>NP_060726 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APL+DL Sbjct: 377 APLYDL 382>NP_699179 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 APLFDLVML 9 A FD+VML Sbjct: 317 ASAFDVVML 325>NP_001276903 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APL+DL Sbjct: 317 APLYDL 322>XP_003960167 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APL+DL Sbjct: 400 APLYDL 405>XP_005253925 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 APLFDLVML 9 A FD+VML Sbjct: 136 ASAFDVVML 144>XP_005253924 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 APLFDLVML 9 A FD+VML Sbjct: 136 ASAFDVVML 144>XP_005253923 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 APLFDLVML 9 A FD+VML Sbjct: 317 ASAFDVVML 325>XP_003846269 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APL+DL Sbjct: 400 APLYDL 405>XP_003846670 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 APLFDL 6 APL+DL Sbjct: 407 APLYDL 412>NP_060797 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PLFDLV 7 PLFDL+ Sbjct: 136 PLFDLM 141>NP_036306 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 APLFDLVML 9 A FD+VML Sbjct: 251 ASAFDVVML 259Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.158 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 443,876 Number of extensions: 549 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |