Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 665 NP_001075109 19 665 NP_597677 17 3301 NP_056199 17 3301 XP_005248339 17 3301 XP_005248337 17 3301 XP_006714531 17 3301 XP_006714530 17 3301 XP_005248180 17 3301 XP_006714090 17 3301 NP_003206 17 3301 NP_115599 16 5631 XP_006718613 16 5631 XP_006718612 16 5631 XP_005274044 16 5631 XP_005274045 16 5631 NP_001127907 16 7355 NP_115639 16 7355 XP_006713848 16 7355 XP_006713847 16 7355 NP_055826 15 9605 NP_001185879 15 9605 NP_003464 15 9605 NP_277050 15 9605 XP_005252660 15 9605 XP_005267270 15 9605 XP_005267269 15 9605>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMYDIIAAE 9 AM+DIIAAE Sbjct: 1302 AMHDIIAAE 1310>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMYDIIAAE 9 AM+DIIAAE Sbjct: 1302 AMHDIIAAE 1310>NP_597677 Length = 2804 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 343 AMYDIISS 350>NP_056199 Length = 2697 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_005248339 Length = 2584 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 123 AMYDIISS 130>XP_005248337 Length = 2698 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_006714531 Length = 2738 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_006714530 Length = 2755 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AMYDIIAA 8 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_005248180 Length = 551 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 AMYD AAE Sbjct: 106 AMYDFQAAE 114>XP_006714090 Length = 551 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 AMYD AAE Sbjct: 106 AMYDFQAAE 114>NP_003206 Length = 631 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 AMYD AAE Sbjct: 186 AMYDFQAAE 194>NP_115599 Length = 2034 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AMYDIIAA 8 A+YD IAA Sbjct: 1665 ALYDAIAA 1672>XP_006718613 Length = 1946 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AMYDIIAA 8 A+YD IAA Sbjct: 1577 ALYDAIAA 1584>XP_006718612 Length = 2041 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AMYDIIAA 8 A+YD IAA Sbjct: 1672 ALYDAIAA 1679>XP_005274044 Length = 2046 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AMYDIIAA 8 A+YD IAA Sbjct: 1677 ALYDAIAA 1684>XP_005274045 Length = 2047 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AMYDIIAA 8 A+YD IAA Sbjct: 1678 ALYDAIAA 1685>NP_001127907 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 YDIIAAE 9 YDIIA E Sbjct: 210 YDIIARE 216>NP_115639 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 YDIIAAE 9 YDIIA E Sbjct: 210 YDIIARE 216>XP_006713848 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 YDIIAAE 9 YDIIA E Sbjct: 112 YDIIARE 118>XP_006713847 Length = 369 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 YDIIAAE 9 YDIIA E Sbjct: 136 YDIIARE 142>NP_055826 Length = 1858 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 2 MYDIIAA 8 MYD++ A Sbjct: 912 MYDVVGA 918>NP_001185879 Length = 1880 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 2 MYDIIAA 8 MYD++ A Sbjct: 934 MYDVVGA 940>NP_003464 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 A+YD AAE Sbjct: 217 AIYDFEAAE 225>NP_277050 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 A+YD++ E Sbjct: 297 ALYDVLGIE 305>XP_005252660 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 A+YD AAE Sbjct: 167 AIYDFEAAE 175>XP_005267270 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 A+YD++ E Sbjct: 297 ALYDVLGIE 305>XP_005267269 Length = 618 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 AMYDIIAAE 9 A+YD++ E Sbjct: 252 ALYDVLGIE 260Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.133 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 353,887 Number of extensions: 287 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |