Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 509 NP_001263689 20 509 NP_001119584 20 509 NP_001119586 20 509 NP_001263625 20 509 NP_001119590 20 509 NP_001263690 20 509 NP_001119585 20 509 NP_001263624 20 509 NP_001119588 20 509 NP_001119587 20 509 NP_001119589 20 509 NP_001263627 18 1482 NP_001263628 18 1482 NP_001263626 18 1482 NP_620055 17 3301 NP_060214 17 3301 NP_620056 17 3301 NP_620057 17 3301 XP_005271027 17 3301 XP_005271023 17 3301 XP_006710772 17 3301 XP_005271021 17 3301 XP_005271020 17 3301 XP_006710771 17 3301 XP_005259653 16 5631 NP_064555 16 5631 NP_061923 16 7355 XP_005263135 16 7355 XP_005263134 16 7355 XP_006714303 16 7355 XP_005263133 16 7355 XP_005263132 16 7355 XP_005263131 16 7355 XP_005263130 16 7355 NP_005319 15 9605 XP_005250117 15 9605 XP_005250100 15 9605 NP_003583 15 9605>NP_000537 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263689 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119584 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001119586 Length = 341 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263625 Length = 302 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119590 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001263690 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119585 Length = 346 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263624 Length = 307 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119588 Length = 209 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001119587 Length = 261 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001119589 Length = 214 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMTIYKQSQ 9 AM IYKQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001263627 Length = 182 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MTIYKQSQ 9 M IYKQSQ Sbjct: 1 MAIYKQSQ 8>NP_001263628 Length = 187 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MTIYKQSQ 9 M IYKQSQ Sbjct: 1 MAIYKQSQ 8>NP_001263626 Length = 234 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MTIYKQSQ 9 M IYKQSQ Sbjct: 1 MAIYKQSQ 8>NP_620055 Length = 558 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 249 TIYRQSQ 255>NP_060214 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>NP_620056 Length = 544 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>NP_620057 Length = 555 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>XP_005271027 Length = 319 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>XP_005271023 Length = 418 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>XP_006710772 Length = 447 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>XP_005271021 Length = 453 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 144 TIYRQSQ 150>XP_005271020 Length = 453 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 144 TIYRQSQ 150>XP_006710771 Length = 478 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIY+QSQ Sbjct: 266 TIYRQSQ 272>XP_005259653 Length = 562 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTIYKQSQ 9 ++IYKQ+Q Sbjct: 153 LSIYKQTQ 160>NP_064555 Length = 563 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTIYKQSQ 9 ++IYKQ+Q Sbjct: 153 LSIYKQTQ 160>NP_061923 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263135 Length = 488 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263134 Length = 800 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_006714303 Length = 957 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 40 AMTLYEQ 46>XP_005263133 Length = 1022 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263132 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263131 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263130 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMTIYKQ 7 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>NP_005319 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TIYKQSQ 9 TIYK+S+ Sbjct: 495 TIYKESK 501>XP_005250117 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 MTIYKQS 8 +T+YK+S Sbjct: 225 LTVYKES 231>XP_005250100 Length = 308 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IYKQSQ 9 +YKQSQ Sbjct: 285 LYKQSQ 290>NP_003583 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 MTIYKQS 8 +T+YK+S Sbjct: 225 LTVYKES 231Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.113 0.278 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 371,201 Number of extensions: 325 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |