Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 19 869 NP_001035957 19 869 XP_006721991 19 869 XP_006721990 19 869 XP_006721989 19 869 XP_005258041 19 869 XP_006721988 19 869 XP_006721987 19 869 XP_006721986 19 869 XP_005258040 19 869 XP_006721985 19 869 NP_000188 16 5631 XP_005252027 16 5631 XP_006717157 16 5631 NP_001162625 16 7355 NP_775765 16 7355 NP_001122400 15 9605 NP_001243465 15 9605 NP_062828 15 9605 XP_006719049 15 9605 XP_005246589 15 9605 XP_006712561 15 9605 NP_002185 15 9605 NP_036510 15 9605>NP_000258 Length = 2818 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1148 AMSNLLNAN 1156>NP_001035957 Length = 2839 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1148 AMSNLLNAN 1156>XP_006721991 Length = 1632 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>XP_006721990 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>XP_006721989 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>XP_005258041 Length = 2836 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1148 AMSNLLNAN 1156>XP_006721988 Length = 2846 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>XP_006721987 Length = 2849 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>XP_006721986 Length = 2854 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1145 AMSNLLNAN 1153>XP_005258040 Length = 2857 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1148 AMSNLLNAN 1156>XP_006721985 Length = 2867 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AMSKLLNAN 9 AMS LLNAN Sbjct: 1158 AMSNLLNAN 1166>NP_000188 Length = 310 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AMSKLLNAN 9 AM+K LN N Sbjct: 234 AMTKYLNTN 242>XP_005252027 Length = 190 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AMSKLLNAN 9 AM+K LN N Sbjct: 114 AMTKYLNTN 122>XP_006717157 Length = 256 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AMSKLLNAN 9 AM+K LN N Sbjct: 180 AMTKYLNTN 188>NP_001162625 Length = 214 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AMSKLLN 7 A+SKLLN Sbjct: 34 ALSKLLN 40>NP_775765 Length = 214 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AMSKLLN 7 A+SKLLN Sbjct: 34 ALSKLLN 40>NP_001122400 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSKLLNAN 9 +SK+LN N Sbjct: 107 LSKVLNGN 114>NP_001243465 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 MSKLLN 7 MSKLLN Sbjct: 52 MSKLLN 57>NP_062828 Length = 394 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 MSKLLN 7 MSKLLN Sbjct: 61 MSKLLN 66>XP_006719049 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 MSKLLN 7 MSKLLN Sbjct: 1 MSKLLN 6>XP_005246589 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSKLLNAN 9 +SK+LN N Sbjct: 107 LSKVLNGN 114>XP_006712561 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSKLLNAN 9 +SK+LN N Sbjct: 107 LSKVLNGN 114>NP_002185 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSKLLNAN 9 +SK+LN N Sbjct: 107 LSKVLNGN 114>NP_036510 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AMSKLLNAN 9 A+ K+LN N Sbjct: 300 ALKKILNKN 308Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.113 0.269 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 311,748 Number of extensions: 387 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |