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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005179                                                              18    1482
NP_733762                                                              18    1482
XP_006713860                                                           18    1482
XP_006713859                                                           18    1482
XP_005247910                                                           18    1482
XP_005247909                                                           18    1482
NP_660333                                                              16    5631
XP_005248194                                                           16    5631

>NP_005179
          Length = 906

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 221 AMALKSTI 228



>NP_733762
          Length = 982

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 213 AMALKSTI 220



>XP_006713860
          Length = 914

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 241 AMALKSTI 248



>XP_006713859
          Length = 966

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 241 AMALKSTI 248



>XP_005247910
          Length = 982

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 213 AMALKSTI 220



>XP_005247909
          Length = 1010

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   AMALKSTI 8
           AMALKSTI
Sbjct: 241 AMALKSTI 248



>NP_660333
          Length = 1321

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 1   AMALKSTIV 9
           ++ALK+TIV
Sbjct: 599 SLALKNTIV 607



>XP_005248194
          Length = 833

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 1   AMALKSTIV 9
           ++ALK+TIV
Sbjct: 599 SLALKNTIV 607



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.323    0.121    0.271 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 207,044
Number of extensions: 99
Number of successful extensions: 8
Number of sequences better than 10000.0: 8
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.1 bits)
S2: 28 (15.4 bits)