Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_001263627 18 1935 NP_001263628 18 1935 NP_001263626 18 1935 NP_004332 16 5631 XP_005264615 16 5631 XP_006712164 16 5631 XP_005264614 16 5631 XP_005264613 16 5631 XP_005264612 16 5631 NP_001164663 16 7355 NP_001003698 15 9605 NP_001161816 15 9605 NP_001003699 15 9605 NP_001003700 15 9605 XP_006715224 15 9605 XP_005249329 15 9605 XP_006715223 15 9605 XP_006715222 15 9605 XP_005249333 15 9605 XP_006715221 15 9605 XP_006715220 15 9605 XP_005249332 15 9605 XP_006715219 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 159 AMAIYKQSQ 167>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 120 AMAIYKQSQ 128>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AMAIHKQSQ 9 AMAI+KQSQ Sbjct: 27 AMAIYKQSQ 35>NP_001263627 Length = 182 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MAIHKQSQ 9 MAI+KQSQ Sbjct: 1 MAIYKQSQ 8>NP_001263628 Length = 187 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MAIHKQSQ 9 MAI+KQSQ Sbjct: 1 MAIYKQSQ 8>NP_001263626 Length = 234 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MAIHKQSQ 9 MAI+KQSQ Sbjct: 1 MAIYKQSQ 8>NP_004332 Length = 2225 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 1024 AMALHRQ 1030>XP_005264615 Length = 2162 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 961 AMALHRQ 967>XP_006712164 Length = 2179 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 961 AMALHRQ 967>XP_005264614 Length = 2191 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 1024 AMALHRQ 1030>XP_005264613 Length = 2208 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 1024 AMALHRQ 1030>XP_005264612 Length = 2242 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AMAIHKQ 7 AMA+H+Q Sbjct: 1024 AMALHRQ 1030>NP_001164663 Length = 590 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AMAIHKQS 8 AMA+HK + Sbjct: 486 AMALHKDN 493>NP_001003698 Length = 1687 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>NP_001161816 Length = 1687 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>NP_001003699 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>NP_001003700 Length = 1476 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715224 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_005249329 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715223 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715222 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_005249333 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715221 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715220 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_005249332 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337>XP_006715219 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AMAIHKQS 8 ++A+HKQ+ Sbjct: 330 SLALHKQT 337Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.110 0.279 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 496,960 Number of extensions: 506 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |