Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 19 869 NP_001091680 19 869 NP_001091679 19 869 XP_006713048 19 869 XP_006713047 19 869 XP_006713046 19 869 XP_005264943 19 869 NP_002221 18 1482 NP_068831 18 1482 XP_006721941 18 1482 XP_006721940 18 1482 XP_006721939 18 1482 XP_006721938 18 1482 XP_006721937 18 1482 XP_006721936 18 1482 XP_006721935 18 1482 XP_006721934 18 1482 XP_005257370 18 1482 NP_004414 17 4312 XP_005247229 17 4312 NP_057095 16 5631 XP_005245942 16 5631 XP_005257608 15 9605 XP_005257606 15 9605>NP_001895 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 239 ALVKMLGSP 247>NP_001091680 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 239 ALVKMLGSP 247>NP_001091679 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 239 ALVKMLGSP 247>XP_006713048 Length = 720 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 239 ALVKMLGSP 247>XP_006713047 Length = 774 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 232 ALVKMLGSP 240>XP_006713046 Length = 774 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 232 ALVKMLGSP 240>XP_005264943 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 ALVKML SP Sbjct: 239 ALVKMLGSP 247>NP_002221 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>NP_068831 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721941 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721940 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721939 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721938 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721937 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721936 Length = 745 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 230 ALVRMLSSP 238>XP_006721935 Length = 762 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 247 ALVRMLSSP 255>XP_006721934 Length = 783 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 268 ALVRMLSSP 276>XP_005257370 Length = 783 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALVKMLASP 9 ALV+ML+SP Sbjct: 268 ALVRMLSSP 276>NP_004414 Length = 716 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 A+VK +ASP Sbjct: 414 AIVKAMASP 422>XP_005247229 Length = 718 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALVKMLASP 9 A+VK +ASP Sbjct: 414 AIVKAMASP 422>NP_057095 Length = 373 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKMLASP 9 VKMLA+P Sbjct: 75 VKMLAAP 81>XP_005245942 Length = 401 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKMLASP 9 VKMLA+P Sbjct: 103 VKMLAAP 109>XP_005257608 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LVKMLASP 9 L+K LA+P Sbjct: 136 LIKFLANP 143>XP_005257606 Length = 219 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LVKMLASP 9 L+K LA+P Sbjct: 208 LIKFLANP 215Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.126 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 380,172 Number of extensions: 464 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |