Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 17 3301 NP_671714 17 3301 XP_006715890 17 3301 XP_005250160 17 3301 XP_005250159 17 3301 NP_001256 16 7355 NP_073754 16 7355 NP_001265354 15 9605 NP_003310 15 9605 NP_597676 15 9605 NP_001243779 15 9605 NP_596869 15 9605 NP_001273897 15 9605 NP_005345 15 9605 NP_001092809 15 9605 NP_444269 15 9605 NP_443124 15 9605 XP_005260357 15 9605 XP_005260356 15 9605 XP_005246888 15 9605 XP_006712788 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605 NP_597681 15 9605>NP_005742 Length = 3907 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALTLGISEL 9 ALTL ISEL Sbjct: 2603 ALTLRISEL 2611>NP_671714 Length = 3899 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALTLGISEL 9 ALTL ISEL Sbjct: 2595 ALTLRISEL 2603>XP_006715890 Length = 3860 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALTLGISEL 9 ALTL ISEL Sbjct: 2556 ALTLRISEL 2564>XP_005250160 Length = 3939 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALTLGISEL 9 ALTL ISEL Sbjct: 2635 ALTLRISEL 2643>XP_005250159 Length = 3952 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALTLGISEL 9 ALTL ISEL Sbjct: 2648 ALTLRISEL 2656>NP_001256 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALTLGISE 8 A TLG+SE Sbjct: 220 AATLGLSE 227>NP_073754 Length = 951 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LTLGISEL 9 LT+GIS++ Sbjct: 306 LTIGISDI 313>NP_001265354 Length = 1774 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTLGISEL 9 LTLG SE+ Sbjct: 1036 LTLGSSEM 1043>NP_003310 Length = 26926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 9876 AMTLGVS 9882>NP_597676 Length = 27051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 10001 AMTLGVS 10007>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 17300 AMTLGVS 17306>NP_596869 Length = 33423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 16373 AMTLGVS 16379>NP_001273897 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALTLGISE 8 ALTL +SE Sbjct: 6 ALTLSLSE 13>NP_005345 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALTLGISE 8 ALTL +SE Sbjct: 49 ALTLSLSE 56>NP_001092809 Length = 199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTLGISE 8 +TLG+SE Sbjct: 96 ITLGLSE 102>NP_444269 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTLGISE 8 +TLG+SE Sbjct: 97 ITLGLSE 103>NP_443124 Length = 2459 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTLGISEL 9 LTLG SE+ Sbjct: 1721 LTLGSSEM 1728>XP_005260357 Length = 241 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTLGISE 8 +TLG+SE Sbjct: 96 ITLGLSE 102>XP_005260356 Length = 242 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTLGISE 8 +TLG+SE Sbjct: 97 ITLGLSE 103>XP_005246888 Length = 22663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 5613 AMTLGVS 5619>XP_006712788 Length = 24022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 6972 AMTLGVS 6978>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 16928 AMTLGVS 16934>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 18434 AMTLGVS 18440>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 18941 AMTLGVS 18947>NP_597681 Length = 27118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALTLGIS 7 A+TLG+S Sbjct: 10068 AMTLGVS 10074Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.137 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 372,039 Number of extensions: 374 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |