Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_006695 17 3301 NP_001124384 17 3301 NP_037395 17 4312 NP_001167455 17 4312 XP_005255969 17 4312 XP_005255968 17 4312 NP_065103 16 5631 NP_037385 16 5631 NP_001018067 16 5631 NP_056965 16 5631 NP_073617 16 5631 XP_006718243 16 5631 XP_006718242 16 5631 XP_006718241 16 5631 XP_006718240 16 5631 NP_443732 16 5631 NP_078966 15 9605 NP_602296 15 9605 NP_060886 15 9605 XP_006723004 15 9605 XP_005253488 15 9605 XP_005253487 15 9605 XP_005253782 15 9605 XP_006719060 15 9605 XP_006719059 15 9605 XP_006719058 15 9605 XP_005253778 15 9605 XP_005253777 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 129 ALNKMFCQL 137>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 90 ALNKMFCQL 98>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 129 ALNKMFCQL 137>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 129 ALNKMFCQL 137>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 90 ALNKMFCQL 98>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 90 ALNKMFCQL 98>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 90 ALNKMFCQL 98>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 129 ALNKMFCQL 137>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALNKMF QL Sbjct: 90 ALNKMFCQL 98>NP_006695 Length = 333 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ALNKMFRQL 9 ALN++F+Q+ Sbjct: 276 ALNRLFQQI 284>NP_001124384 Length = 365 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ALNKMFRQL 9 ALN++F+Q+ Sbjct: 308 ALNRLFQQI 316>NP_037395 Length = 651 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALN++ RQL Sbjct: 139 ALNQLMRQL 147>NP_001167455 Length = 652 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALN++ RQL Sbjct: 139 ALNQLMRQL 147>XP_005255969 Length = 615 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALN++ RQL Sbjct: 139 ALNQLMRQL 147>XP_005255968 Length = 616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 ALN++ RQL Sbjct: 139 ALNQLMRQL 147>NP_065103 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ALNKMFRQ 8 A+N+ FRQ Sbjct: 372 AMNRQFRQ 379>NP_037385 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 47 LNEMFREV 54>NP_001018067 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 47 LNEMFREV 54>NP_056965 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 47 LNEMFREV 54>NP_073617 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ALNKMF 6 ALNKMF Sbjct: 362 ALNKMF 367>XP_006718243 Length = 216 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 110 LNEMFREV 117>XP_006718242 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 110 LNEMFREV 117>XP_006718241 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 47 LNEMFREV 54>XP_006718240 Length = 413 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LNKMFRQL 9 LN+MFR++ Sbjct: 110 LNEMFREV 117>NP_443732 Length = 358 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KMFRQL 9 KMFRQL Sbjct: 115 KMFRQL 120>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALNKMFR 7 ALN++FR Sbjct: 14356 ALNQLFR 14362>NP_602296 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>NP_060886 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK FR++ Sbjct: 119 SLNKCFRKV 127>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALNKMFR 7 ALN++FR Sbjct: 6292 ALNQLFR 6298>XP_005253488 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK FR++ Sbjct: 119 SLNKCFRKV 127>XP_005253487 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK FR++ Sbjct: 119 SLNKCFRKV 127>XP_005253782 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>XP_006719060 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>XP_006719059 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>XP_006719058 Length = 384 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>XP_005253778 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182>XP_005253777 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNKMFRQL 9 +LNK+ RQL Sbjct: 174 SLNKLPRQL 182Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.141 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,989 Number of extensions: 613 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |