Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 18 1482 NP_001087241 18 1482 XP_005265799 18 1482 XP_005265798 18 1482 XP_005265797 18 1482 NP_002011 18 1935 NP_891555 18 1935 NP_002244 18 1935 NP_005202 17 3301 NP_006197 17 3301 NP_002600 17 3301 NP_001275634 17 3301 XP_005268521 17 3301 XP_006714104 17 3301 XP_005265800 17 3301 XP_006714103 17 3301 XP_006714102 17 3301 NP_002010 17 4312 NP_001158307 16 5631 NP_061952 16 5631 NP_079003 16 5631 NP_001264056 16 5631 NP_056054 16 7355 XP_005251905 16 7355 XP_005251904 16 7355 NP_061735 16 7355 NP_114382 16 7355 NP_996898 15 9605 NP_002733 15 9605 NP_001035275 15 9605 XP_006723530 15 9605 XP_006723529 15 9605 XP_005267916 15 9605 XP_005247321 15 9605 XP_006713623 15 9605>NP_000213 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LKVL Sbjct: 636 ALMSELKVL 644>NP_001087241 Length = 972 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LKVL Sbjct: 632 ALMSELKVL 640>XP_005265799 Length = 973 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LKVL Sbjct: 633 ALMSELKVL 641>XP_005265798 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LKVL Sbjct: 637 ALMSELKVL 645>XP_005265797 Length = 977 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LKVL Sbjct: 637 ALMSELKVL 645>NP_002011 Length = 1298 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK+L Sbjct: 892 ALMSELKIL 900>NP_891555 Length = 1363 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK+L Sbjct: 892 ALMSELKIL 900>NP_002244 Length = 1356 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK+L Sbjct: 881 ALMSELKIL 889>NP_005202 Length = 972 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 629 ALMSELKIM 637>NP_006197 Length = 1089 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 640 ALMSELKIM 648>NP_002600 Length = 1106 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 647 ALMSELKIM 655>NP_001275634 Length = 972 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 629 ALMSELKIM 637>XP_005268521 Length = 1042 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 583 ALMSELKIM 591>XP_006714104 Length = 832 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 665 ALMSELKIM 673>XP_005265800 Length = 1089 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 640 ALMSELKIM 648>XP_006714103 Length = 1111 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 662 ALMSELKIM 670>XP_006714102 Length = 1114 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALMS+LK++ Sbjct: 665 ALMSELKIM 673>NP_002010 Length = 1338 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ALMSKLKVL 9 ALM++LK+L Sbjct: 874 ALMTELKIL 882>NP_001158307 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALMSKLKVL 9 A+M+K KVL Sbjct: 50 AIMNKFKVL 58>NP_061952 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALMSKLKVL 9 A+M+K KVL Sbjct: 50 AIMNKFKVL 58>NP_079003 Length = 552 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LMSKLKVL 9 L+SKLK+L Sbjct: 140 LVSKLKIL 147>NP_001264056 Length = 443 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LMSKLKVL 9 L+SKLK+L Sbjct: 140 LVSKLKIL 147>NP_056054 Length = 1186 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MSKLKVL 9 MSKLKV+ Sbjct: 1 MSKLKVI 7>XP_005251905 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MSKLKVL 9 MSKLKV+ Sbjct: 1 MSKLKVI 7>XP_005251904 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MSKLKVL 9 MSKLKV+ Sbjct: 1 MSKLKVI 7>NP_061735 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LMSKLKVL 9 LM+K+KVL Sbjct: 327 LMAKVKVL 334>NP_114382 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LMSKLKVL 9 LM+K+KVL Sbjct: 327 LMAKVKVL 334>NP_996898 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALMSKLK 7 ALMSK+K Sbjct: 476 ALMSKVK 482>NP_002733 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LMSKLKV 8 LMSK+KV Sbjct: 263 LMSKVKV 269>NP_001035275 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALMSKLKVL 9 ALM+K+K L Sbjct: 111 ALMTKIKKL 119>XP_006723530 Length = 470 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALMSKLKVL 9 ALM+K+K L Sbjct: 58 ALMTKIKKL 66>XP_006723529 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALMSKLKVL 9 ALM+K+K L Sbjct: 111 ALMTKIKKL 119>XP_005267916 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LMSKLKV 8 LMSK+KV Sbjct: 271 LMSKVKV 277>XP_005247321 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALMSKLK 7 ALMSK+K Sbjct: 476 ALMSKVK 482>XP_006713623 Length = 778 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALMSKLK 7 ALMSK+K Sbjct: 459 ALMSKVK 465Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.134 0.302 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 240,812 Number of extensions: 259 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |