Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 509 NP_671714 20 509 XP_006715890 20 509 XP_005250160 20 509 XP_005250159 20 509 NP_004537 17 4312 NP_064508 16 5631 NP_055906 16 5631 NP_542119 16 5631 NP_110412 16 5631 NP_001724 16 5631 XP_005267508 16 5631 NP_077313 16 7355 YP_003024028 16 7355 NP_000949 15 9605 NP_001367 15 9605 NP_055951 15 9605 NP_001348 15 9605 NP_803879 15 9605 NP_803881 15 9605 NP_001258992 15 9605 NP_110428 15 9605 NP_001229291 15 9605 NP_001258991 15 9605 NP_001092270 15 9605 NP_001258990 15 9605 NP_114154 15 9605 NP_060890 15 9605 XP_006725230 15 9605 XP_006724671 15 9605 XP_006724670 15 9605 XP_005255674 15 9605 XP_006720283 15 9605 XP_006713129 15 9605 XP_006713128 15 9605 XP_005265032 15 9605 XP_005265031 15 9605 XP_005265030 15 9605 XP_006710817 15 9605 XP_005271062 15 9605 XP_006710816 15 9605 NP_065869 15 9605 NP_542174 15 9605>NP_005742 Length = 3907 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 AL ARMGGQ Sbjct: 3738 ALLARMGGQ 3746>NP_671714 Length = 3899 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 AL ARMGGQ Sbjct: 3730 ALLARMGGQ 3738>XP_006715890 Length = 3860 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 AL ARMGGQ Sbjct: 3691 ALLARMGGQ 3699>XP_005250160 Length = 3939 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 AL ARMGGQ Sbjct: 3770 ALLARMGGQ 3778>XP_005250159 Length = 3952 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 AL ARMGGQ Sbjct: 3783 ALLARMGGQ 3791>NP_004537 Length = 105 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 A FAR+GG+ Sbjct: 8 ASFARVGGR 16>NP_064508 Length = 589 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 +L+AR GG+ Sbjct: 345 SLYARQGGR 353>NP_055906 Length = 1720 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALFARMG 7 ALFA+MG Sbjct: 1684 ALFAQMG 1690>NP_542119 Length = 525 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LFARMGGQ 9 +FARMG Q Sbjct: 27 MFARMGFQ 34>NP_110412 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ALFARMGG 8 ALF R GG Sbjct: 277 ALFTRSGG 284>NP_001724 Length = 705 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ALFARMGG 8 ALF R GG Sbjct: 10 ALFCRAGG 17>XP_005267508 Length = 1773 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALFARMG 7 ALFA+MG Sbjct: 1737 ALFAQMG 1743>NP_077313 Length = 480 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALFARMGGQ 9 +LF++MG Q Sbjct: 87 SLFSQMGSQ 95>YP_003024028 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALFARMGG 8 A+FA MGG Sbjct: 385 AVFAIMGG 392>NP_000949 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LFARMGG 8 LF R+GG Sbjct: 347 LFCRIGG 353>NP_001367 Length = 4646 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALFARMGG 8 AL AR+GG Sbjct: 1895 ALEARLGG 1902>NP_055951 Length = 2570 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>NP_001348 Length = 1270 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 ARMGG+ Sbjct: 928 ARMGGE 933>NP_803879 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_803881 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_001258992 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_110428 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_001229291 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_001258991 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_001092270 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_001258990 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>NP_114154 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 284 ARLGGQ 289>NP_060890 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 ALFARMGG 8 ++F+R+GG Sbjct: 439 SMFSRVGG 446>XP_006725230 Length = 2636 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FARMGG 8 FAR+GG Sbjct: 584 FARVGG 589>XP_006724671 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>XP_006724670 Length = 741 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FARMGGQ 9 +ARMGG+ Sbjct: 338 WARMGGK 344>XP_005255674 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 182 ARLGGQ 187>XP_006720283 Length = 2636 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FARMGG 8 FAR+GG Sbjct: 584 FARVGG 589>XP_006713129 Length = 1521 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>XP_006713128 Length = 1619 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>XP_005265032 Length = 2545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>XP_005265031 Length = 2569 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>XP_005265030 Length = 2595 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ARMGGQ 9 AR+GGQ Sbjct: 1067 ARLGGQ 1072>XP_006710817 Length = 315 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 ALFARMGG 8 ++F+R+GG Sbjct: 207 SMFSRVGG 214>XP_005271062 Length = 316 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 ALFARMGG 8 ++F+R+GG Sbjct: 208 SMFSRVGG 215>XP_006710816 Length = 476 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 ALFARMGG 8 ++F+R+GG Sbjct: 368 SMFSRVGG 375>NP_065869 Length = 2458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FARMGG 8 FAR+GG Sbjct: 406 FARVGG 411>NP_542174 Length = 204 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ALFARMGG 8 ALF ++GG Sbjct: 16 ALFLQLGG 23Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.144 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 565,003 Number of extensions: 831 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |