Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 18 1135 NP_000240 18 1135 NP_001161089 18 1135 XP_005265218 18 1135 NP_958934 16 5631 NP_005536 16 5631 NP_060848 16 5631 NP_001129494 16 7355 NP_001185896 16 7355 NP_689635 16 7355 NP_001240758 16 7355 NP_001131145 16 7355 NP_703194 16 7355 NP_060090 16 7355 NP_036350 16 7355 NP_004507 16 7355 NP_060857 16 7355 NP_001164608 16 7355 NP_620711 16 7355 NP_005095 16 7355 NP_001186384 16 7355 NP_001106653 16 7355 NP_001186385 16 7355 XP_006722805 16 7355 XP_005252142 16 7355 XP_005252140 16 7355 XP_005247007 16 7355 NP_001073896 15 9605 NP_001252541 15 9605 NP_057368 15 9605 NP_996882 15 9605 NP_004506 15 9605 NP_001254738 15 9605 XP_005263859 15 9605>NP_001245200 Length = 687 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 ALASISH A Sbjct: 103 ALASISHVA 111>NP_000240 Length = 756 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 ALASISH A Sbjct: 103 ALASISHVA 111>NP_001161089 Length = 658 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 ALASISH A Sbjct: 5 ALASISHVA 13>XP_005265218 Length = 687 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 ALASISH A Sbjct: 103 ALASISHVA 111>NP_958934 Length = 428 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALASISH 7 ALAS+SH Sbjct: 93 ALASLSH 99>NP_005536 Length = 428 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALASISH 7 ALAS+SH Sbjct: 93 ALASLSH 99>NP_060848 Length = 374 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LASISHA 8 LAS+SHA Sbjct: 200 LASLSHA 206>NP_001129494 Length = 964 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALASISH 7 +LASISH Sbjct: 12 SLASISH 18>NP_001185896 Length = 857 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ALASISH 7 +LASISH Sbjct: 12 SLASISH 18>NP_689635 Length = 806 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ALASISHA 8 A++S+SHA Sbjct: 62 AVSSVSHA 69>NP_001240758 Length = 808 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ALASISHA 8 A++S+SHA Sbjct: 62 AVSSVSHA 69>NP_001131145 Length = 706 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>NP_703194 Length = 690 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>NP_060090 Length = 898 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>NP_036350 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>NP_004507 Length = 702 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>NP_060857 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 198 ALASLRHA 205>NP_001164608 Length = 658 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 184 ALASLRHA 191>NP_620711 Length = 737 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 A+ASI HA Sbjct: 693 AIASIRHA 700>NP_005095 Length = 801 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 A++S+SH A Sbjct: 217 AVSSVSHTA 225>NP_001186384 Length = 836 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 A++S+SH A Sbjct: 217 AVSSVSHTA 225>NP_001106653 Length = 801 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 A++S+SH A Sbjct: 217 AVSSVSHTA 225>NP_001186385 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ALASISHAA 9 A++S+SH A Sbjct: 170 AVSSVSHTA 178>XP_006722805 Length = 855 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 206 ALASLRHA 213>XP_005252142 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 198 ALASLRHA 205>XP_005252140 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALAS+ HA Sbjct: 198 ALASLRHA 205>XP_005247007 Length = 696 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 A+ASI HA Sbjct: 652 AIASIRHA 659>NP_001073896 Length = 1577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SISHAA 9 SISHAA Sbjct: 1307 SISHAA 1312>NP_001252541 Length = 2371 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LASISH 7 LASISH Sbjct: 970 LASISH 975>NP_057368 Length = 2376 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LASISH 7 LASISH Sbjct: 975 LASISH 980>NP_996882 Length = 1551 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LASISH 7 LASISH Sbjct: 975 LASISH 980>NP_004506 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALA+I HA Sbjct: 201 ALAAIRHA 208>NP_001254738 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALASISHA 8 ALA+I HA Sbjct: 163 ALAAIRHA 170>XP_005263859 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SISHAA 9 SISHAA Sbjct: 1336 SISHAA 1341Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.108 0.261 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 474,014 Number of extensions: 466 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |