Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_005237 16 7355 NP_722581 16 7355 NP_001138775 16 7355 NP_653287 16 7355 NP_065928 16 7355 XP_005256527 16 7355 XP_005271980 16 7355 XP_006714636 16 7355 XP_006714635 16 7355 NP_055935 15 9605 NP_597732 15 9605 XP_006722741 15 9605 XP_006722740 15 9605 XP_006722739 15 9605 XP_006722738 15 9605 XP_006722737 15 9605 XP_005259567 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AKVTQTEL 8 AKVTQTEL Sbjct: 1871 AKVTQTEL 1878>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AKVTQTEL 8 AKVTQTEL Sbjct: 1871 AKVTQTEL 1878>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AKVTQTEL 8 AKVTQTEL Sbjct: 1824 AKVTQTEL 1831>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AKVTQTEL 8 AKVTQTEL Sbjct: 1903 AKVTQTEL 1910>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 AKVTQTEL 8 AKVTQTEL Sbjct: 1903 AKVTQTEL 1910>NP_005237 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 KVT+TEL Sbjct: 127 KVTKTEL 133>NP_722581 Length = 642 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 AKVTQTELT 9 ++VT+TE+T Sbjct: 405 SQVTKTEIT 413>NP_001138775 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 +VTQTEL Sbjct: 78 EVTQTEL 84>NP_653287 Length = 706 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 +VTQTEL Sbjct: 72 EVTQTEL 78>NP_065928 Length = 4427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 +K+T TE+T Sbjct: 3579 SKITATEVT 3587>XP_005256527 Length = 4427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 +K+T TE+T Sbjct: 3579 SKITATEVT 3587>XP_005271980 Length = 749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 KVT+TEL Sbjct: 54 KVTKTEL 60>XP_006714636 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 KVT+TEL Sbjct: 127 KVTKTEL 133>XP_006714635 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVTQTEL 8 KVT+TEL Sbjct: 127 KVTKTEL 133>NP_055935 Length = 4169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AKVTQTEL 8 AKVTQ+ L Sbjct: 487 AKVTQSNL 494>NP_597732 Length = 1146 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 594 AKVTETKPT 602>XP_006722741 Length = 1117 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 565 AKVTETKPT 573>XP_006722740 Length = 1153 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 601 AKVTETKPT 609>XP_006722739 Length = 1181 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 629 AKVTETKPT 637>XP_006722738 Length = 1181 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 629 AKVTETKPT 637>XP_006722737 Length = 1182 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 630 AKVTETKPT 638>XP_005259567 Length = 1217 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKVTQTELT 9 AKVT+T+ T Sbjct: 665 AKVTETKPT 673Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.106 0.241 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 326,851 Number of extensions: 361 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |