Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_116165 17 4312 NP_001269877 17 4312 XP_005269685 17 4312 XP_005269684 17 4312 XP_005269683 17 4312 XP_005269681 17 4312 XP_006717770 17 4312 XP_005269679 17 4312>NP_116165 Length = 2540 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 571 KVDLTQSS 578>NP_001269877 Length = 2358 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 389 KVDLTQSS 396>XP_005269685 Length = 1700 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 571 KVDLTQSS 578>XP_005269684 Length = 2032 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 571 KVDLTQSS 578>XP_005269683 Length = 2252 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 283 KVDLTQSS 290>XP_005269681 Length = 2321 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 352 KVDLTQSS 359>XP_006717770 Length = 2358 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 389 KVDLTQSS 396>XP_005269679 Length = 2502 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVDLRQSS 9 KVDL QSS Sbjct: 533 KVDLTQSS 540Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.305 0.115 0.264 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 377,882 Number of extensions: 194 Number of successful extensions: 8 Number of sequences better than 10000.0: 8 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 8 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |