Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_063946 17 3301 NP_001137446 17 3301 NP_001035902 17 4312 NP_003887 17 4312 XP_005264687 17 4312 XP_006712190 17 4312 NP_055273 16 5631 NP_775960 16 5631 XP_005251991 16 5631 XP_005245150 16 5631 XP_006711340 16 5631 NP_001180211 16 7355 NP_001182058 16 7355 NP_001054 16 7355 NP_001092805 16 7355 NP_055574 16 7355 NP_001137246 16 7355 XP_005270285 16 7355 XP_005270284 16 7355 XP_006716479 16 7355 XP_006713948 16 7355 NP_115815 16 7355 NP_002323 15 9605 NP_060762 15 9605 NP_001230655 15 9605 NP_001230654 15 9605 NP_001123356 15 9605 NP_055429 15 9605 NP_001265124 15 9605 NP_078905 15 9605 NP_057010 15 9605 XP_005263275 15 9605 XP_006713261 15 9605 XP_006713260 15 9605 XP_006713259 15 9605 XP_006713258 15 9605>NP_063946 Length = 780 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AKTCRAAVG 9 +KTC+ A+G Sbjct: 445 SKTCKPALG 453>NP_001137446 Length = 745 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AKTCRAAVG 9 +KTC+ A+G Sbjct: 410 SKTCKPALG 418>NP_001035902 Length = 395 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AKTCRAAV 8 AKTCR V Sbjct: 166 AKTCRRCV 173>NP_003887 Length = 418 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AKTCRAAV 8 AKTCR V Sbjct: 189 AKTCRRCV 196>XP_005264687 Length = 365 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AKTCRAAV 8 AKTCR V Sbjct: 189 AKTCRRCV 196>XP_006712190 Length = 378 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AKTCRAAV 8 AKTCR V Sbjct: 149 AKTCRRCV 156>NP_055273 Length = 609 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCR +VG Sbjct: 401 TCRTSVG 407>NP_775960 Length = 1285 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCRAA G Sbjct: 1187 TCRAAGG 1193>XP_005251991 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCRAA G Sbjct: 855 TCRAAGG 861>XP_005245150 Length = 609 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCR +VG Sbjct: 401 TCRTSVG 407>XP_006711340 Length = 684 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCR +VG Sbjct: 476 TCRTSVG 482>NP_001180211 Length = 646 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CRAAVG 9 CRAA+G Sbjct: 543 CRAAMG 548>NP_001182058 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TCRAAVG 9 TCR A+G Sbjct: 255 TCRRALG 261>NP_001054 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 K+C AVG Sbjct: 467 KSCHTAVG 474>NP_001092805 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 322 KTCNISVG 329>NP_055574 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 322 KTCNISVG 329>NP_001137246 Length = 350 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 342 KTCNISVG 349>XP_005270285 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 322 KTCNISVG 329>XP_005270284 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 322 KTCNISVG 329>XP_006716479 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 322 KTCNISVG 329>XP_006713948 Length = 747 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CRAAVG 9 CRAA+G Sbjct: 544 CRAAMG 549>NP_115815 Length = 376 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTCRAAVG 9 KTC +VG Sbjct: 368 KTCNISVG 375>NP_002323 Length = 4544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 AKTCRAAVG 9 A+TCR G Sbjct: 501 ARTCRCRSG 509>NP_060762 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AKTCRAAVG 9 A TC AA+G Sbjct: 181 AFTCYAALG 189>NP_001230655 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>NP_001230654 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>NP_001123356 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>NP_055429 Length = 1843 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 AKTCRAAV 8 A CRAAV Sbjct: 628 ADMCRAAV 635>NP_001265124 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>NP_078905 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AKTCRAAV 8 +K C+AA+ Sbjct: 271 SKVCKAAI 278>NP_057010 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>XP_005263275 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AKTCRAAV 8 +K C+AA+ Sbjct: 242 SKVCKAAI 249>XP_006713261 Length = 242 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 21 CRCAVG 26>XP_006713260 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>XP_006713259 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97>XP_006713258 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CRAAVG 9 CR AVG Sbjct: 92 CRCAVG 97Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.124 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 508,865 Number of extensions: 512 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |