Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004963 19 869 XP_005251512 19 869 NP_008835 17 3301 NP_001075109 17 3301 NP_640339 16 5631 XP_006717042 16 5631 XP_005251797 16 5631 NP_001136089 16 7355 NP_001185970 16 7355 NP_001185971 16 7355 NP_001185969 16 7355 NP_001136091 16 7355 NP_006132 16 7355 NP_001561 16 7355 NP_060549 16 7355 NP_001273086 16 7355 NP_001136090 16 7355 NP_001622 16 7355 NP_071764 16 7355 NP_037368 15 9605 NP_001161093 15 9605 NP_060855 15 9605 NP_835227 15 9605 NP_075048 15 9605 NP_055839 15 9605>NP_004963 Length = 1132 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AKNILLFRE 9 AKNILL RE Sbjct: 676 AKNILLIRE 684>XP_005251512 Length = 1132 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AKNILLFRE 9 AKNILL RE Sbjct: 676 AKNILLIRE 684>NP_008835 Length = 4128 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKNILLFRE 9 +KNIL FR+ Sbjct: 3317 SKNILAFRD 3325>NP_001075109 Length = 4097 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKNILLFRE 9 +KNIL FR+ Sbjct: 3317 SKNILAFRD 3325>NP_640339 Length = 516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLFRE 9 KN+ LFRE Sbjct: 341 KNLELFRE 348>XP_006717042 Length = 290 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLFRE 9 KN+ LFRE Sbjct: 115 KNLELFRE 122>XP_005251797 Length = 475 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLFRE 9 KN+ LFRE Sbjct: 300 KNLELFRE 307>NP_001136089 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 461 RNLLLFR 467>NP_001185970 Length = 682 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 476 RNLLLFR 482>NP_001185971 Length = 706 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 500 RNLLLFR 506>NP_001185969 Length = 704 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 498 RNLLLFR 504>NP_001136091 Length = 658 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 452 RNLLLFR 458>NP_006132 Length = 492 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLFRE 9 KNIL+F E Sbjct: 55 KNILVFGE 62>NP_001561 Length = 625 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KNILLFRE 9 +NILL++E Sbjct: 607 ENILLYKE 614>NP_060549 Length = 995 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AKNILLFRE 9 AKNI+ +RE Sbjct: 729 AKNIIEWRE 737>NP_001273086 Length = 415 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLFRE 9 KNIL+F E Sbjct: 55 KNILVFGE 62>NP_001136090 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 461 RNLLLFR 467>NP_001622 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AKNILLF 7 AKN++LF Sbjct: 52 AKNLILF 58>NP_071764 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KNILLFR 8 +N+LLFR Sbjct: 461 RNLLLFR 467>NP_037368 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 ILLFRE 9 ILLFRE Sbjct: 115 ILLFRE 120>NP_001161093 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 ILLFRE 9 ILLFRE Sbjct: 51 ILLFRE 56>NP_060855 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AKNILLFR 8 A+N LLFR Sbjct: 183 ARNPLLFR 190>NP_835227 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KNILLFRE 9 +N+LLF++ Sbjct: 156 RNVLLFKK 163>NP_075048 Length = 1088 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 ILLFRE 9 ILLFRE Sbjct: 794 ILLFRE 799>NP_055839 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 ILLFRE 9 ILLFRE Sbjct: 796 ILLFRE 801Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.148 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 402,809 Number of extensions: 570 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |