Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 19 869 NP_009297 19 869 NP_001271141 17 4312 NP_001239264 17 4312 NP_001271142 17 4312 NP_775083 17 4312 NP_001035905 17 4312 NP_001177371 17 4312 NP_116255 17 4312 XP_005254784 17 4312 XP_005254783 17 4312 XP_006714775 17 4312 XP_006714774 17 4312 XP_006714773 17 4312 XP_006714772 17 4312 XP_006714771 17 4312 XP_006714770 17 4312 XP_006714769 17 4312 XP_006714768 17 4312 XP_006714767 17 4312 XP_006714766 17 4312 XP_006714765 17 4312 XP_006714764 17 4312 XP_006714763 17 4312 XP_006714762 17 4312 XP_006714761 17 4312 XP_006714760 17 4312 XP_006714759 17 4312 NP_689914 16 7355 NP_076985 15 9605>NP_005148 Length = 1130 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AISRSSEQM 9 AISR+SEQM Sbjct: 1042 AISRNSEQM 1050>NP_009297 Length = 1149 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AISRSSEQM 9 AISR+SEQM Sbjct: 1061 AISRNSEQM 1069>NP_001271141 Length = 666 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>NP_001239264 Length = 1302 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ISRSSEQM 9 ISRS EQM Sbjct: 1091 ISRSREQM 1098>NP_001271142 Length = 636 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>NP_775083 Length = 686 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>NP_001035905 Length = 750 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 125 AVSRSAEQ 132>NP_001177371 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>NP_116255 Length = 1302 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ISRSSEQM 9 ISRS EQM Sbjct: 1091 ISRSREQM 1098>XP_005254784 Length = 1303 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ISRSSEQM 9 ISRS EQM Sbjct: 1091 ISRSREQM 1098>XP_005254783 Length = 1303 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ISRSSEQM 9 ISRS EQM Sbjct: 1091 ISRSREQM 1098>XP_006714775 Length = 654 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>XP_006714774 Length = 667 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>XP_006714773 Length = 673 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>XP_006714772 Length = 689 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 64 AVSRSAEQ 71>XP_006714771 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>XP_006714770 Length = 708 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>XP_006714769 Length = 735 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 110 AVSRSAEQ 117>XP_006714768 Length = 749 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 125 AVSRSAEQ 132>XP_006714767 Length = 754 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 129 AVSRSAEQ 136>XP_006714766 Length = 756 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 144 AVSRSAEQ 151>XP_006714765 Length = 757 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 132 AVSRSAEQ 139>XP_006714764 Length = 769 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 144 AVSRSAEQ 151>XP_006714763 Length = 772 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 147 AVSRSAEQ 154>XP_006714762 Length = 776 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 151 AVSRSAEQ 158>XP_006714761 Length = 778 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>XP_006714760 Length = 790 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>XP_006714759 Length = 791 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>NP_689914 Length = 5058 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AISRSSEQ 8 AISR+SE+ Sbjct: 2481 AISRASEE 2488>NP_076985 Length = 1104 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ISRSSEQ 8 ISRSSE+ Sbjct: 201 ISRSSEE 207Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.298 0.102 0.214 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 286,505 Number of extensions: 302 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |