Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 17 3301 NP_671714 17 3301 XP_006715890 17 3301 XP_005250160 17 3301 XP_005250159 17 3301 NP_060903 15 9605 NP_001140160 15 9605 XP_006712114 15 9605>NP_005742 Length = 3907 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AIKESVAMS 9 AIKES AMS Sbjct: 2264 AIKESDAMS 2272>NP_671714 Length = 3899 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AIKESVAMS 9 AIKES AMS Sbjct: 2256 AIKESDAMS 2264>XP_006715890 Length = 3860 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AIKESVAMS 9 AIKES AMS Sbjct: 2217 AIKESDAMS 2225>XP_005250160 Length = 3939 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AIKESVAMS 9 AIKES AMS Sbjct: 2296 AIKESDAMS 2304>XP_005250159 Length = 3952 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AIKESVAMS 9 AIKES AMS Sbjct: 2309 AIKESDAMS 2317>NP_060903 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AIKESVAM 8 A+K++VAM Sbjct: 1303 AVKDAVAM 1310>NP_001140160 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AIKESVAM 8 A+K++VAM Sbjct: 1303 AVKDAVAM 1310>XP_006712114 Length = 661 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AIKESVAM 8 A+K++VAM Sbjct: 643 AVKDAVAM 650Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.106 0.223 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 256,101 Number of extensions: 77 Number of successful extensions: 8 Number of sequences better than 10000.0: 8 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 8 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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