Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_071370 17 2528 XP_006716147 17 2528 XP_006716146 17 2528 XP_006716145 17 2528 NP_002169 17 4312 NP_060555 16 5631 NP_060695 16 5631 NP_001265202 16 5631 NP_599025 16 5631 NP_001035544 16 5631 NP_001268662 16 5631 NP_075062 16 5631 NP_872633 16 5631 NP_872634 16 5631 NP_872631 16 5631 NP_005218 16 5631 NP_001268661 16 5631 NP_005039 16 5631 XP_005251560 16 5631 XP_005250608 16 5631 XP_006716161 16 5631 XP_005250607 16 5631 XP_005250606 16 5631 XP_006711503 16 5631 NP_001956 16 5631 NP_602298 16 5631 NP_872632 16 5631 NP_061178 16 5631 NP_002438 16 7355 NP_001231866 16 7355 NP_001129687 16 7355 NP_476432 16 7355 NP_002283 16 7355 XP_005265227 16 7355 XP_005265184 16 7355 XP_006711087 16 7355 XP_006711086 16 7355 NP_476431 16 7355 XP_006710702 15 9605 XP_005270828 15 9605>NP_071370 Length = 608 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 GQCLRA Sbjct: 576 GQCLRA 581>XP_006716147 Length = 608 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 GQCLRA Sbjct: 576 GQCLRA 581>XP_006716146 Length = 608 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 GQCLRA Sbjct: 576 GQCLRA 581>XP_006716145 Length = 608 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 GQCLRA Sbjct: 576 GQCLRA 581>NP_002169 Length = 240 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQCLRARA 9 G+CL ARA Sbjct: 102 GRCLPARA 109>NP_060555 Length = 1041 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 G+CLRA Sbjct: 714 GECLRA 719>NP_060695 Length = 513 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 +GQCLR Sbjct: 295 SGQCLR 300>NP_001265202 Length = 688 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 677 AGECLR 682>NP_599025 Length = 758 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 61 QCSRARA 67>NP_001035544 Length = 738 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 40 QCSRARA 46>NP_001268662 Length = 651 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 61 QCSRARA 67>NP_075062 Length = 759 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 61 QCSRARA 67>NP_872633 Length = 688 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 677 AGECLR 682>NP_872634 Length = 699 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 688 AGECLR 693>NP_872631 Length = 207 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 +GQCLR Sbjct: 141 SGQCLR 146>NP_005218 Length = 201 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 +GQCLR Sbjct: 141 SGQCLR 146>NP_001268661 Length = 723 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 61 QCSRARA 67>NP_005039 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GQCLRARA 9 G CL ARA Sbjct: 17 GSCLLARA 24>XP_005251560 Length = 462 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 +GQCLR Sbjct: 244 SGQCLR 249>XP_005250608 Length = 719 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 708 AGECLR 713>XP_006716161 Length = 719 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 708 AGECLR 713>XP_005250607 Length = 730 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 719 AGECLR 724>XP_005250606 Length = 767 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 AG+CLR Sbjct: 756 AGECLR 761>XP_006711503 Length = 860 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 G+CLRA Sbjct: 533 GECLRA 538>NP_001956 Length = 589 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQCLRARA 9 G+C RARA Sbjct: 41 GRCGRARA 48>NP_602298 Length = 740 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QC RARA Sbjct: 61 QCSRARA 67>NP_872632 Length = 193 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AGQCLR 6 +GQCLR Sbjct: 141 SGQCLR 146>NP_061178 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QCLRARA 9 QCL ARA Sbjct: 640 QCLAARA 646>NP_002438 Length = 1400 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 G+CLRA Sbjct: 534 GRCLRA 539>NP_001231866 Length = 1351 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 G+CLRA Sbjct: 534 GRCLRA 539>NP_001129687 Length = 228 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGQCLRARA 9 +G C RAR+ Sbjct: 159 SGSCRRARS 167>NP_476432 Length = 220 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGQCLRARA 9 +G C RAR+ Sbjct: 151 SGSCRRARS 159>NP_002283 Length = 1798 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 GQCLR 6 GQCLR Sbjct: 1005 GQCLR 1009>XP_005265227 Length = 1401 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GQCLRA 7 G+CLRA Sbjct: 534 GRCLRA 539>XP_005265184 Length = 1798 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 GQCLR 6 GQCLR Sbjct: 1005 GQCLR 1009>XP_006711087 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGQCLRARA 9 +G C RAR+ Sbjct: 168 SGSCRRARS 176>XP_006711086 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGQCLRARA 9 +G C RAR+ Sbjct: 168 SGSCRRARS 176>NP_476431 Length = 228 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGQCLRARA 9 +G C RAR+ Sbjct: 159 SGSCRRARS 167>XP_006710702 Length = 353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 QCLRAR 8 +CLRAR Sbjct: 61 RCLRAR 66>XP_005270828 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 AGQCLRAR 8 AG+CL R Sbjct: 242 AGECLALR 249Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.132 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 597,213 Number of extensions: 627 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |