Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 20 509 NP_858045 20 509 NP_006525 20 509 NP_001167559 20 509 NP_056303 16 5631 NP_072094 16 5631 NP_848645 16 7355 NP_000262 16 7355 NP_542402 16 7355 NP_065829 16 7355 NP_997465 16 7355 NP_008988 16 7355 NP_006725 16 7355 NP_001005413 16 7355 NP_127490 16 7355 NP_001008395 16 7355 XP_005259257 16 7355 XP_005259256 16 7355 XP_006722542 16 7355 XP_005258336 16 7355 XP_005258335 16 7355 XP_005258334 16 7355 XP_005269520 16 7355 XP_005267014 16 7355 XP_005245183 16 7355 XP_006711352 16 7355 XP_005245182 16 7355 NP_003361 16 7355 NP_775764 15 9605 NP_663619 15 9605 XP_006720233 15 9605 XP_005267806 15 9605 XP_006720232 15 9605 XP_006720231 15 9605 XP_005264418 15 9605 NP_057706 15 9605 NP_057421 15 9605>NP_001167558 Length = 1423 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGIMEPMNS 9 AG MEPMNS Sbjct: 927 AGRMEPMNS 935>NP_858045 Length = 1424 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGIMEPMNS 9 AG MEPMNS Sbjct: 927 AGRMEPMNS 935>NP_006525 Length = 1420 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGIMEPMNS 9 AG MEPMNS Sbjct: 927 AGRMEPMNS 935>NP_001167559 Length = 1415 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGIMEPMNS 9 AG MEPMNS Sbjct: 922 AGRMEPMNS 930>NP_056303 Length = 385 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AGIMEPMN 8 AG++EP N Sbjct: 301 AGVVEPEN 308>NP_072094 Length = 361 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AGIMEPMN 8 AG++EP N Sbjct: 277 AGVVEPEN 284>NP_848645 Length = 302 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGIMEPMNS 9 AG+ +PM S Sbjct: 128 AGLKDPMKS 136>NP_000262 Length = 1278 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEPMN+ Sbjct: 217 MEPMNN 222>NP_542402 Length = 221 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEP+NS Sbjct: 55 MEPLNS 60>NP_065829 Length = 1907 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GIMEPMN 8 GI+EPM+ Sbjct: 785 GIIEPMD 791>NP_997465 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GIMEPMNS 9 G+M P NS Sbjct: 84 GLMRPANS 91>NP_008988 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AGIMEPM 7 AGI+EP+ Sbjct: 20 AGILEPV 26>NP_006725 Length = 2446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GIMEPM 7 GIMEP+ Sbjct: 454 GIMEPL 459>NP_001005413 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AGIMEPM 7 AGI+EP+ Sbjct: 20 AGILEPV 26>NP_127490 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AGIMEPM 7 AGI+EP+ Sbjct: 20 AGILEPV 26>NP_001008395 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IMEPMN 8 I+EPMN Sbjct: 282 ILEPMN 287>XP_005259257 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GIMEPMNS 9 G+ME MN+ Sbjct: 262 GLMEEMNA 269>XP_005259256 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GIMEPMNS 9 G+ME MN+ Sbjct: 261 GLMEEMNA 268>XP_006722542 Length = 1273 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEPMN+ Sbjct: 217 MEPMNN 222>XP_005258336 Length = 1286 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEPMN+ Sbjct: 217 MEPMNN 222>XP_005258335 Length = 1295 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEPMN+ Sbjct: 217 MEPMNN 222>XP_005258334 Length = 1303 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MEPMNS 9 MEPMN+ Sbjct: 217 MEPMNN 222>XP_005269520 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AGIMEPM 7 AGI+EP+ Sbjct: 20 AGILEPV 26>XP_005267014 Length = 2446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GIMEPM 7 GIMEP+ Sbjct: 454 GIMEPL 459>XP_005245183 Length = 207 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGIMEPMNS 9 AG+ +PM S Sbjct: 127 AGLKDPMKS 135>XP_006711352 Length = 301 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGIMEPMNS 9 AG+ +PM S Sbjct: 127 AGLKDPMKS 135>XP_005245182 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AGIMEPMNS 9 AG+ +PM S Sbjct: 139 AGLKDPMKS 147>NP_003361 Length = 380 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GIMEPMNS 9 G+ME MN+ Sbjct: 262 GLMEEMNA 269>NP_775764 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AGIMEPMN 8 AG+M+P++ Sbjct: 335 AGLMDPVD 342>NP_663619 Length = 170 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AGIMEPMN 8 +GI+ P+N Sbjct: 14 SGILRPLN 21>XP_006720233 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 GIMEPMN 8 G+ME MN Sbjct: 309 GLMEEMN 315>XP_005267806 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 GIMEPMN 8 G+ME MN Sbjct: 272 GLMEEMN 278>XP_006720232 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 GIMEPMN 8 G+ME MN Sbjct: 309 GLMEEMN 315>XP_006720231 Length = 459 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 GIMEPMN 8 G+ME MN Sbjct: 309 GLMEEMN 315>XP_005264418 Length = 177 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AGIMEPMN 8 +GI+ P+N Sbjct: 14 SGILRPLN 21>NP_057706 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 AGIMEPMN 8 +GI+ P+N Sbjct: 14 SGILRPLN 21>NP_057421 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 GIMEPMN 8 G+ME MN Sbjct: 268 GLMEEMN 274Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.124 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 612,903 Number of extensions: 984 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |