Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 19 869 NP_000242 19 869 XP_005264389 19 869 NP_001020774 17 4312 NP_000440 17 4312 XP_005245463 17 4312 XP_005245462 17 4312 NP_006436 16 5631 NP_036553 16 7355 NP_001361 16 7355 XP_006712019 16 7355 NP_005959 15 9605 NP_689698 15 9605 NP_001093148 15 9605 NP_945314 15 9605 NP_112480 15 9605 XP_005272540 15 9605 XP_005272539 15 9605 XP_005272538 15 9605 XP_005272537 15 9605 XP_005272536 15 9605 XP_005272535 15 9605>NP_001245210 Length = 868 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGANNLQSV 9 AGA NLQSV Sbjct: 4 AGAKNLQSV 12>NP_000242 Length = 934 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGANNLQSV 9 AGA NLQSV Sbjct: 70 AGAKNLQSV 78>XP_005264389 Length = 921 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AGANNLQSV 9 AGA NLQSV Sbjct: 70 AGAKNLQSV 78>NP_001020774 Length = 616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNLQ Sbjct: 316 GANNLQ 321>NP_000440 Length = 616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNLQ Sbjct: 316 GANNLQ 321>XP_005245463 Length = 616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNLQ Sbjct: 316 GANNLQ 321>XP_005245462 Length = 616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNLQ Sbjct: 316 GANNLQ 321>NP_006436 Length = 2335 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GANNLQSV 9 G NNLQ V Sbjct: 958 GINNLQDV 965>NP_036553 Length = 1914 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AGANNLQSV 9 +GA +LQSV Sbjct: 1091 SGAKSLQSV 1099>NP_001361 Length = 4158 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NNLQSV 9 NNLQSV Sbjct: 846 NNLQSV 851>XP_006712019 Length = 4158 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NNLQSV 9 NNLQSV Sbjct: 846 NNLQSV 851>NP_005959 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 559 GANNLE 564>NP_689698 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AGANNLQS 8 AGA+ LQS Sbjct: 61 AGASELQS 68>NP_001093148 Length = 371 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GANNLQSV 9 G N LQS+ Sbjct: 151 GGNQLQSI 158>NP_945314 Length = 1386 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ANNLQSV 9 A+NLQSV Sbjct: 1014 AHNLQSV 1020>NP_112480 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 520 GANNLE 525>XP_005272540 Length = 571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 400 GANNLE 405>XP_005272539 Length = 595 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 424 GANNLE 429>XP_005272538 Length = 610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 439 GANNLE 444>XP_005272537 Length = 676 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 505 GANNLE 510>XP_005272536 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 541 GANNLE 546>XP_005272535 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 GANNLQ 7 GANNL+ Sbjct: 544 GANNLE 549Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.113 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 422,852 Number of extensions: 361 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |