Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443179 18 1482 XP_005266703 18 1482 NP_073609 16 7355 XP_006718339 16 7355 XP_006718338 16 7355 XP_006718337 16 7355 XP_006718336 16 7355 NP_694539 15 9605 NP_001129101 15 9605>NP_443179 Length = 2170 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AESALADRR 9 AESALAD R Sbjct: 1303 AESALADSR 1311>XP_005266703 Length = 1501 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AESALADRR 9 AESALAD R Sbjct: 634 AESALADSR 642>NP_073609 Length = 715 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 ESALAD R Sbjct: 168 ESALADCR 175>XP_006718339 Length = 546 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 ESALAD R Sbjct: 168 ESALADCR 175>XP_006718338 Length = 715 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 ESALAD R Sbjct: 168 ESALADCR 175>XP_006718337 Length = 715 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 ESALAD R Sbjct: 168 ESALADCR 175>XP_006718336 Length = 715 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 ESALAD R Sbjct: 168 ESALADCR 175>NP_694539 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 E ALA+RR Sbjct: 542 EEALANRR 549>NP_001129101 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ESALADRR 9 E ALA+RR Sbjct: 542 EEALANRR 549Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.117 0.279 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 265,636 Number of extensions: 192 Number of successful extensions: 9 Number of sequences better than 10000.0: 9 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 9 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |