Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 509 NP_001035957 20 509 XP_006721991 20 509 XP_006721990 20 509 XP_006721989 20 509 XP_005258041 20 509 XP_006721988 20 509 XP_006721987 20 509 XP_006721986 20 509 XP_005258040 20 509 XP_006721985 20 509 NP_005957 17 2528 XP_005246643 17 2528 XP_005246642 17 2528 XP_005246641 17 2528 XP_005246640 17 2528 XP_005246638 17 2528 XP_005246639 17 2528 XP_005246636 17 2528 XP_005246637 17 2528 XP_006712603 17 2528 NP_001093900 16 5631 XP_006714348 16 5631 XP_006714347 16 5631 NP_001093896 16 5631 NP_001093898 16 5631 NP_066982 16 5631 NP_001093897 16 5631 NP_001093899 16 5631 NP_149118 16 7355 NP_056110 15 9605 XP_005258159 15 9605 XP_006722384 15 9605>NP_000258 Length = 2818 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1268 ADSMQTLF 1275>NP_001035957 Length = 2839 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1268 ADSMQTLF 1275>XP_006721991 Length = 1632 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>XP_006721990 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>XP_006721989 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>XP_005258041 Length = 2836 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1268 ADSMQTLF 1275>XP_006721988 Length = 2846 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>XP_006721987 Length = 2849 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>XP_006721986 Length = 2854 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1265 ADSMQTLF 1272>XP_005258040 Length = 2857 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1268 ADSMQTLF 1275>XP_006721985 Length = 2867 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 ADSMQTLF 8 ADSMQTLF Sbjct: 1278 ADSMQTLF 1285>NP_005957 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246643 Length = 486 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246642 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246641 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246640 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246638 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246639 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246636 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_005246637 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>XP_006712603 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DSMQTLFE 9 DS+QTLF+ Sbjct: 343 DSVQTLFQ 350>NP_001093900 Length = 516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 213 ESMQKLFE 220>XP_006714348 Length = 478 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 175 ESMQKLFE 182>XP_006714347 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 224 ESMQKLFE 231>NP_001093896 Length = 608 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 305 ESMQKLFE 312>NP_001093898 Length = 559 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 256 ESMQKLFE 263>NP_066982 Length = 607 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 305 ESMQKLFE 312>NP_001093897 Length = 607 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 304 ESMQKLFE 311>NP_001093899 Length = 558 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 +SMQ LFE Sbjct: 255 ESMQKLFE 262>NP_149118 Length = 1060 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DSMQTLFE 9 D +QTLF+ Sbjct: 497 DPLQTLFQ 504>NP_056110 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 DSMQTLF 8 D MQTL+ Sbjct: 397 DDMQTLY 403>XP_005258159 Length = 1817 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 DSMQTLF 8 D MQTL+ Sbjct: 209 DDMQTLY 215>XP_006722384 Length = 1877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 DSMQTLF 8 D MQTL+ Sbjct: 269 DDMQTLY 275Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.122 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,359 Number of extensions: 524 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |