Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 18 1135 NP_066124 18 1135 XP_006717999 18 1135 NP_003046 17 4312 NP_056652 16 5631 NP_004099 16 5631 NP_077013 16 7355 NP_001257822 16 7355 NP_001257821 16 7355 NP_001257820 16 7355 XP_005273301 16 7355 NP_003263 16 7355 NP_001123475 15 9605 NP_653243 15 9605 NP_277040 15 9605>NP_065681 Length = 1072 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AATVLFSFI 9 AA VLFSFI Sbjct: 639 AAAVLFSFI 647>NP_066124 Length = 1114 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AATVLFSFI 9 AA VLFSFI Sbjct: 639 AAAVLFSFI 647>XP_006717999 Length = 1207 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AATVLFSFI 9 AA VLFSFI Sbjct: 732 AAAVLFSFI 740>NP_003046 Length = 532 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AATVLFSF 8 A+TVLF+F Sbjct: 164 ASTVLFAF 171>NP_056652 Length = 275 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AATVLFSFI 9 AAT+L SF+ Sbjct: 12 AATLLLSFL 20>NP_004099 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AATVLFSFI 9 AAT+L SF+ Sbjct: 12 AATLLLSFL 20>NP_077013 Length = 173 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AATVLFSFI 9 A TVLF F+ Sbjct: 2 ADTVLFEFL 10>NP_001257822 Length = 113 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AATVLFSFI 9 A TVLF F+ Sbjct: 2 ADTVLFEFL 10>NP_001257821 Length = 127 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AATVLFSFI 9 A TVLF F+ Sbjct: 2 ADTVLFEFL 10>NP_001257820 Length = 159 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AATVLFSFI 9 A TVLF F+ Sbjct: 2 ADTVLFEFL 10>XP_005273301 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TVLFSF 8 TVLFSF Sbjct: 93 TVLFSF 98>NP_003263 Length = 399 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TVLFSF 8 TVLFSF Sbjct: 93 TVLFSF 98>NP_001123475 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TVLFSFI 9 TV+FSF+ Sbjct: 141 TVVFSFL 147>NP_653243 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TVLFSFI 9 TV+FSF+ Sbjct: 121 TVVFSFL 127>NP_277040 Length = 397 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VLFSFI 9 VLFSFI Sbjct: 163 VLFSFI 168Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.145 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 297,049 Number of extensions: 323 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |