Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_945352 18 1935 XP_005266141 18 1935 NP_001129941 17 3301 NP_076432 17 3301 XP_005247785 17 3301 XP_005247784 17 3301 XP_005247783 17 3301 XP_005247782 17 3301 NP_116207 16 5631 NP_848638 16 7355 NP_001263347 16 7355 NP_055681 16 7355 NP_055633 16 7355 XP_005277842 16 7355 XP_006718461 16 7355 XP_006718460 16 7355 XP_005266194 16 7355 XP_005266193 16 7355 XP_005266191 16 7355 XP_005266190 16 7355 XP_005266189 16 7355 NP_006139 15 9605 NP_001258537 15 9605 NP_004090 15 9605 XP_005276376 15 9605 XP_005272546 15 9605 XP_006722863 15 9605 XP_006719973 15 9605 XP_005251388 15 9605 XP_005276077 15 9605>NP_945352 Length = 184 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 AAPVQSQRA 9 AAP+Q+Q+A Sbjct: 115 AAPIQNQQA 123>XP_005266141 Length = 184 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 AAPVQSQRA 9 AAP+Q+Q+A Sbjct: 115 AAPIQNQQA 123>NP_001129941 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 312 AAPVPSQR 319>NP_076432 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247785 Length = 488 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247784 Length = 569 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 306 AAPVPSQR 313>XP_005247783 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247782 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAPVQSQR 8 AAPV SQR Sbjct: 312 AAPVPSQR 319>NP_116207 Length = 335 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 PVQSQRA 9 PVQ QRA Sbjct: 11 PVQEQRA 17>NP_848638 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 APVQSQ 7 APVQSQ Sbjct: 22 APVQSQ 27>NP_001263347 Length = 2334 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 776 AAPVQSR 782>NP_055681 Length = 2357 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 776 AAPVQSR 782>NP_055633 Length = 1216 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 APVQSQ 7 APVQSQ Sbjct: 559 APVQSQ 564>XP_005277842 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 APVQSQ 7 APVQSQ Sbjct: 95 APVQSQ 100>XP_006718461 Length = 1247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 APVQSQ 7 APVQSQ Sbjct: 559 APVQSQ 564>XP_006718460 Length = 1392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 APVQSQ 7 APVQSQ Sbjct: 704 APVQSQ 709>XP_005266194 Length = 2379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 776 AAPVQSR 782>XP_005266193 Length = 2248 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 924 AAPVQSR 930>XP_005266191 Length = 2379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 776 AAPVQSR 782>XP_005266190 Length = 2485 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 924 AAPVQSR 930>XP_005266189 Length = 2505 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAPVQSQ 7 AAPVQS+ Sbjct: 924 AAPVQSR 930>NP_006139 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AAPVQSQRA 9 AAPV QR+ Sbjct: 190 AAPVSIQRS 198>NP_001258537 Length = 205 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AAPVQSQRA 9 AAPV QR+ Sbjct: 134 AAPVSIQRS 142>NP_004090 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 PVQSQRA 9 PVQ QRA Sbjct: 200 PVQLQRA 206>XP_005276376 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AAPVQSQRA 9 +AP+Q+Q A Sbjct: 147 SAPLQAQEA 155>XP_005272546 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 APVQSQRA 9 AP SQRA Sbjct: 50 APAPSQRA 57>XP_006722863 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 APVQSQRA 9 AP SQRA Sbjct: 50 APAPSQRA 57>XP_006719973 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AAPVQSQRA 9 +AP+QS +A Sbjct: 188 SAPIQSAQA 196>XP_005251388 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AAPVQSQRA 9 +AP+Q+Q A Sbjct: 147 SAPLQAQEA 155>XP_005276077 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AAPVQSQRA 9 +AP+Q+Q A Sbjct: 147 SAPLQAQEA 155Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.108 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 571,784 Number of extensions: 1020 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |