Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 21 229 NP_671714 21 229 XP_006715890 21 229 XP_005250160 21 229 XP_005250159 21 229 NP_005172 18 1135 NP_037484 17 4312 NP_001074445 17 4312 XP_006719566 17 4312 XP_005267010 17 4312 NP_001273485 16 5631 NP_001243326 16 7355 NP_004504 16 7355 NP_001165599 16 7355 NP_757366 16 7355 NP_001032367 16 7355 NP_005307 16 7355 NP_001135779 16 7355 NP_001243329 16 7355 NP_001243327 16 7355 NP_114144 16 7355 XP_005254403 16 7355 XP_005254402 16 7355 XP_005254401 16 7355 XP_005254400 16 7355 XP_005254399 16 7355 XP_006718271 16 7355 NP_004393 15 9605 NP_001269598 15 9605 NP_055446 15 9605 NP_114072 15 9605 NP_001092805 15 9605 NP_055574 15 9605 NP_001128669 15 9605 NP_037408 15 9605 NP_001399 15 9605 XP_005270355 15 9605 XP_006718143 15 9605 XP_005270354 15 9605 XP_005270352 15 9605 XP_005270351 15 9605 XP_006718142 15 9605 XP_006716479 15 9605 XP_005265157 15 9605 XP_005265156 15 9605 XP_006713187 15 9605 XP_006710468 15 9605 XP_005270637 15 9605 NP_835467 15 9605>NP_005742 Length = 3907 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AAIKQRDGV 9 AAIKQRDG+ Sbjct: 198 AAIKQRDGI 206>NP_671714 Length = 3899 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AAIKQRDGV 9 AAIKQRDG+ Sbjct: 198 AAIKQRDGI 206>XP_006715890 Length = 3860 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AAIKQRDGV 9 AAIKQRDG+ Sbjct: 198 AAIKQRDGI 206>XP_005250160 Length = 3939 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AAIKQRDGV 9 AAIKQRDG+ Sbjct: 198 AAIKQRDGI 206>XP_005250159 Length = 3952 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AAIKQRDGV 9 AAIKQRDG+ Sbjct: 198 AAIKQRDGI 206>NP_005172 Length = 260 Score = 18.5 bits (36), Expect = 1135 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AIKQRDGV 9 A+KQRDG+ Sbjct: 133 ALKQRDGI 140>NP_037484 Length = 958 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAIKQRDGV 9 A I+QRDG+ Sbjct: 605 AFIRQRDGL 613>NP_001074445 Length = 958 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAIKQRDGV 9 A I+QRDG+ Sbjct: 605 AFIRQRDGL 613>XP_006719566 Length = 261 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 AA+KQR G Sbjct: 177 AALKQRSG 184>XP_005267010 Length = 958 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAIKQRDGV 9 A I+QRDG+ Sbjct: 605 AFIRQRDGL 613>NP_001273485 Length = 438 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 AIKQRDGV 9 ++KQ+DG+ Sbjct: 278 SLKQKDGI 285>NP_001243326 Length = 539 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 +A+KQ DG Sbjct: 402 SAVKQADG 409>NP_004504 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 402 ATLKQLDGI 410>NP_001165599 Length = 1331 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 1103 ATLKQLDGI 1111>NP_757366 Length = 1332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 1103 ATLKQLDGI 1111>NP_001032367 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 +A+KQ DG Sbjct: 402 SAVKQADG 409>NP_005307 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K+RD V Sbjct: 85 AVKERDAV 92>NP_001135779 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K+RD V Sbjct: 85 AVKERDAV 92>NP_001243329 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 +A+KQ DG Sbjct: 331 SAVKQADG 338>NP_001243327 Length = 506 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 +A+KQ DG Sbjct: 363 SAVKQADG 370>NP_114144 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 +A+KQ DG Sbjct: 436 SAVKQADG 443>XP_005254403 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 402 ATLKQLDGI 410>XP_005254402 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 493 ATLKQLDGI 501>XP_005254401 Length = 722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 493 ATLKQLDGI 501>XP_005254400 Length = 1378 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 1150 ATLKQLDGI 1158>XP_005254399 Length = 1379 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIKQRDGV 9 A +KQ DG+ Sbjct: 1150 ATLKQLDGI 1158>XP_006718271 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K+RD V Sbjct: 85 AVKERDAV 92>NP_004393 Length = 338 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKQRDG 8 AIK++DG Sbjct: 275 AIKEQDG 281>NP_001269598 Length = 362 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKQRDG 8 AIK++DG Sbjct: 299 AIKEQDG 305>NP_055446 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 937 AVKMRNGV 944>NP_114072 Length = 694 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AAIKQRDG 8 + IKQ+DG Sbjct: 512 SVIKQQDG 519>NP_001092805 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 AIKQRDG 8 A+KQ DG Sbjct: 91 AVKQSDG 97>NP_055574 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 AIKQRDG 8 A+KQ DG Sbjct: 91 AVKQSDG 97>NP_001128669 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IKQRDG 8 IKQ+DG Sbjct: 427 IKQKDG 432>NP_037408 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AAIKQRD 7 AA++QRD Sbjct: 357 AAVQQRD 363>NP_001399 Length = 2923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A K+RDG+ Sbjct: 1396 ATKERDGL 1403>XP_005270355 Length = 968 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 800 AVKMRNGV 807>XP_006718143 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 831 AVKMRNGV 838>XP_005270354 Length = 1014 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 846 AVKMRNGV 853>XP_005270352 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 950 AVKMRNGV 957>XP_005270351 Length = 1133 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 965 AVKMRNGV 972>XP_006718142 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A+K R+GV Sbjct: 996 AVKMRNGV 1003>XP_006716479 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 AIKQRDG 8 A+KQ DG Sbjct: 91 AVKQSDG 97>XP_005265157 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IKQRDG 8 IKQ+DG Sbjct: 410 IKQKDG 415>XP_005265156 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IKQRDG 8 IKQ+DG Sbjct: 427 IKQKDG 432>XP_006713187 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IKQRDG 8 IKQ+DG Sbjct: 427 IKQKDG 432>XP_006710468 Length = 2916 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A K+RDG+ Sbjct: 1396 ATKERDGL 1403>XP_005270637 Length = 2921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AIKQRDGV 9 A K+RDG+ Sbjct: 1396 ATKERDGL 1403>NP_835467 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 IKQRDG 8 IKQ+DG Sbjct: 427 IKQKDG 432Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 533,522 Number of extensions: 639 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |